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The map label for this gene is priC [H]

Identifier: 194736637

GI number: 194736637

Start: 547245

End: 547772

Strand: Reverse

Name: priC [H]

Synonym: SeSA_A0541

Alternate gene names: 194736637

Gene position: 547772-547245 (Counterclockwise)

Preceding gene: 194738198

Following gene: 194737252

Centisome position: 11.63

GC content: 58.52

Gene sequence:

>528_bases
TTGAAAACCGCTATGCTGTTACAGACGCTGGAAGAGAGGCTGGCGACGCTACGCCAACGCTGCGCGCCGCTGGCGCAACA
TGCGACGTTAAGCGCGCGCTTTGACCGACATCTTTTCCGTACCCGCAGTACTCTGTTGCAGGGATATCTGGAAGAGGCTG
ACGCCAATCTCGCCGCGTTGCGTCAGGCGGTAAAACATGAGCAACTGCCGCAAGTCGCCTGGCTGGCGGAACATCTGGCT
TCGCAACTGGAGGCGATATCGCGTGAAACCGCCGCCTGGTCGCTGCGCCAGTGGGACACCGCCGCGCCAGGGCTTGGCCG
TTGGCAGCGCAGACGAATACAGCATCAGGAGTTTGAACGTCGACTACTGGCGATGACACAGGAGCGCAAAATTCGTCTGG
CGCAAGCGACCAGCCTTGTCGAACAACAAACGCTGCAAAAGGAAGTCGAGATCTATGAAGGACGGCTGGCGCGCTGCCGA
CATGCGCTGGAGAAAATAGAAAACGTACTGGCGCGTTTAACCCGTTAA

Upstream 100 bases:

>100_bases
CAGCCAATGATGATTAAAATAGTACGTTGCATAATGCGAATCGTTATCAAACAGAAGGCTACTGTAGCACAGCCTGTCTT
ATTTTCATCGGGGTGTTGAA

Downstream 100 bases:

>100_bases
TCCTGGAGAAAGTATGTCGCTTGAAAATGCCCCTGATGAAGTCAAACTGGCCGTGGATTTAATTGTGCTGCTTGAAGAGA
ATCGCTTACCGGCACGAACG

Product: primosomal replication protein N''

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKTAMLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLAALRQAVKHEQLPQVAWLAEHLA
SQLEAISRETAAWSLRQWDTAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATSLVEQQTLQKEVEIYEGRLARCR
HALEKIENVLARLTR

Sequences:

>Translated_175_residues
MKTAMLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLAALRQAVKHEQLPQVAWLAEHLA
SQLEAISRETAAWSLRQWDTAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATSLVEQQTLQKEVEIYEGRLARCR
HALEKIENVLARLTR
>Mature_175_residues
MKTAMLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLAALRQAVKHEQLPQVAWLAEHLA
SQLEAISRETAAWSLRQWDTAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATSLVEQQTLQKEVEIYEGRLARCR
HALEKIENVLARLTR

Specific function: PriA recognizes a specific hairpin sequence on bacteriophage phi X174 ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB, dnaC, dnaT and primase [H]

COG id: COG3923

COG function: function code L; Primosomal replication protein N''

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786673, Length=175, Percent_Identity=73.7142857142857, Blast_Score=254, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010890 [H]

Pfam domain/function: PF07445 priB_priC [H]

EC number: NA

Molecular weight: Translated: 20396; Mature: 20396

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAMLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLAAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RQAVKHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDTAAPGLGRWQRRRIQHQEFER
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RLLAMTQERKIRLAQATSLVEQQTLQKEVEIYEGRLARCRHALEKIENVLARLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTAMLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLAAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RQAVKHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDTAAPGLGRWQRRRIQHQEFER
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RLLAMTQERKIRLAQATSLVEQQTLQKEVEIYEGRLARCRHALEKIENVLARLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1856227; 9278503 [H]