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The map label for this gene is yhjD [H]

Identifier: 194736490

GI number: 194736490

Start: 3665646

End: 3666674

Strand: Direct

Name: yhjD [H]

Synonym: SeSA_A3802

Alternate gene names: 194736490

Gene position: 3665646-3666674 (Clockwise)

Preceding gene: 194737184

Following gene: 194735897

Centisome position: 77.84

GC content: 51.02

Gene sequence:

>1029_bases
ATGACGCAGGAAAATGACGTAAAACGCCCTATTCAGGAACTGGAGCACGACCCGATACAAAAAATAGAAACGCAGCCGCA
TGACGCCCCGGAAAAAAACGAAAAGGCAAATCAGGCGTTGCATTCCGTCACCTCCCTGGTGCAAAAAATTCAGCGTCAAC
CAATGGTGGCCCACCTCATTCGCGCGACCGAACGTTTTAACGATCGACTGGGTAATCAGTTTGGCGCGGCTATCACCTAC
TTTTCGTTTCTGTCGATGATCCCGATAATGATGGTGTCCTTTGCCGCGGCAGGTTTTATCCTCGCCTCGCACCCTAATCT
ACTGGAAGATATTTTCAGCAAGATATTGATGAATGTGAGCGATCCTACGCTGGCGTCCACGCTTAAAAATACGATTAATA
CGGCGGTTCAACAGCGTACCACGGTAGGGCTGGTCGGACTGGGTATCGCGCTCTATTCCGGCGTTAACTGGATGGGCAAC
CTGCGGGAAGCGATTCGCGCCCAGTCACGGGACGTCTGGGAGCGCAAGCCGCAGGATCAGGAGAAAATCTGGCTCAAATA
TCTACGCGATTTTATCTCGCTGATTGGATTATTAATCGCTTTAATCATTACGCTGTCCATTACTTCCATCGCCGGTTCCG
CCCAGCAGATGATCATCTCCGCCTTGTATCTCGACAGCATCGAATGGTTAAAACCGGCCTGGCATTTGATCGGTCTGGCC
ATCTCTATTTTTGCCAACTATCTGCTTTTCTTCTGGATTTTCTGGCGACTGCCTCGCCATCGTCCCCGTAAAAAAGCGTT
GATTCGCGGGACATTTATTGCCGCTATCGGTTTTGAGGTGATTAAAATCATTATGACCTATACGCTGCCGTCACTGGTGA
AATCGCCTTCCGGCGCAGCGTTTGGCTCCGTACTCGGTCTGATGGCCTTCTTCTACTTTTTTGCCCGTCTGACGTTATTC
TGCGCGGCCTGGATAGCCACCGCCGAATACAAGGACGACCCGCGAATGCCGGGTAAAACGCAACGCTAG

Upstream 100 bases:

>100_bases
TGAAACCATTAAAGAGGCCGCAGAGTAGCCGCATTTTCAGCATCCACCGGGGAGAAGCTATACTGACATATTCTATTAAT
GATGAAGGACTACCGACCTG

Downstream 100 bases:

>100_bases
TCTGCGGCTTGCTGCCGAATGGCACGCACGGCGTCGTCATTCGGCCTACTGCTGTGTGTACCCAGGCCGGGCAAGCAAAG
CGTACCCGGCGGTACAATCA

Product: putative ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTSLVQKIQRQPMVAHLIRATERFNDRLGNQFGAAITY
FSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGN
LREAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLF
CAAWIATAEYKDDPRMPGKTQR

Sequences:

>Translated_342_residues
MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTSLVQKIQRQPMVAHLIRATERFNDRLGNQFGAAITY
FSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGN
LREAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLF
CAAWIATAEYKDDPRMPGKTQR
>Mature_341_residues
TQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTSLVQKIQRQPMVAHLIRATERFNDRLGNQFGAAITYF
SFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGNL
REAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLAI
SIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLFC
AAWIATAEYKDDPRMPGKTQR

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=341, Percent_Identity=85.3372434017595, Blast_Score=612, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 38685; Mature: 38554

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTSLVQKIQRQPMVAHLI
CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RATERFNDRLGNQFGAAITYFSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
DPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGNLREAIRAQSRDVWERKPQDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHH
EKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
FGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTSLVQKIQRQPMVAHLI
CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RATERFNDRLGNQFGAAITYFSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
DPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGNLREAIRAQSRDVWERKPQDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHH
EKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
FGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]