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The map label for this gene is yhjC [H]

Identifier: 194737184

GI number: 194737184

Start: 3664671

End: 3665573

Strand: Direct

Name: yhjC [H]

Synonym: SeSA_A3801

Alternate gene names: 194737184

Gene position: 3664671-3665573 (Clockwise)

Preceding gene: 194738209

Following gene: 194736490

Centisome position: 77.82

GC content: 53.38

Gene sequence:

>903_bases
ATGATGGATAAAATATATGCAATGAAATTGTTTGTACGCGTGGCGGAACGGGAAAGTTTTTCCCGTGCAGCAGAGGATAT
CGGCCTTCCCAAAGGCAGCGTCTCACGGCAAATACAAGCGTTAGAACATCAACTGGGCATCCGCCTGCTCCACCGCACCA
CCCGGCGGGTACAGCTTACTCAGGACGGAATGGTTTACTACGAACGGGCAAAAGATCTGTTGAGTAACCTTGATGAACTG
GAAGGTCTTTTCCAGCCTGATCCCGCCAGTATCAGTGGCAAAATACGGGTAGATATACCGCCATGTCTCGCAAACAGCCT
CATCATGCCGCGCCTGCCCACTTTTTTGCATCAGTATCCCGGCATTGCGCTGGAATTTTGTAGTAGCGATCGACAGGTCG
ATTTACTACGGGAAGATTTCGACTGCGTGGTGCGCACAGAGCCGCTACATGCGCCAGGGATACTGACGCGCCCGCTTGGC
AAACTGAGGATGGTGAACTGCGCCAGCCCACAATACCTGGCGCGCTTTGGGTATCCAGAAAACCTTGACGACCTCGCCTC
ACATGCGGTGGTGCATTATTCATTAACACCGGGAGTCTCTTCACCGGGTTTTGCCTTTGAAACTCCCCACGGTATGCAGT
GGGTAAAAACCGGCGGAATGCTAACGGTAAACAGTACGGAGACCTGGCATACGGCCTGTCTGGCAGGATTAGGGATCATT
CAGACGCCGCGCATTGCTGTACGGGAGGCGTTACGCGCCGGAACGCTCATTGAAATTTTACCGCAATATCGCGCCGCTCC
ACTGCCGGTGACGCTGCATTATCCCCATCGCCGTAATCTTTCCCGCCGGGTACACCTGTTTATGGTATGGCTGACTGAAA
CCATTAAAGAGGCCGCAGAGTAG

Upstream 100 bases:

>100_bases
ACGCGAGCAATGATTGCGAAAGGGCTTATTAGATGCTAGAAAATCAATAAAACCAGCCGCTTCAGCGTCACTGTTTCAAT
AAAAACAATAATAGAGCCTG

Downstream 100 bases:

>100_bases
CCGCATTTTCAGCATCCACCGGGGAGAAGCTATACTGACATATTCTATTAATGATGAAGGACTACCGACCTGATGACGCA
GGAAAATGACGTAAAACGCC

Product: LysR substrate binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDEL
EGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEFCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLG
KLRMVNCASPQYLARFGYPENLDDLASHAVVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
QTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE

Sequences:

>Translated_300_residues
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDEL
EGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEFCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLG
KLRMVNCASPQYLARFGYPENLDDLASHAVVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
QTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
>Mature_300_residues
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDEL
EGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEFCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLG
KLRMVNCASPQYLARFGYPENLDDLASHAVVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
QTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=66.2162162162162, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=30.4794520547945, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=28.5714285714286, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=30.8219178082192, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=27.2727272727273, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789440, Length=281, Percent_Identity=28.4697508896797, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=26.1324041811847, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789173, Length=188, Percent_Identity=31.9148936170213, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=22.3333333333333, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788481, Length=267, Percent_Identity=26.9662921348315, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=29.6774193548387, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=176, Percent_Identity=28.4090909090909, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790783, Length=257, Percent_Identity=26.4591439688716, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788748, Length=169, Percent_Identity=36.6863905325444, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=28.9655172413793, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33762; Mature: 33762

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCC
GIALEFCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGKLRMVNCASPQYLARFGYPE
CCEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCHHCCCCCEEEEECCCHHHHHHCCCCC
NLDDLASHAVVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
CHHHHHHCEEEEEEECCCCCCCCCEEECCCCCEEEECCCEEEECCCCHHHHHHHHCCCCC
QTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
CCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCC
GIALEFCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGKLRMVNCASPQYLARFGYPE
CCEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCHHCCCCCEEEEECCCHHHHHHCCCCC
NLDDLASHAVVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
CHHHHHHCEEEEEEECCCCCCCCCEEECCCCCEEEECCCEEEECCCCHHHHHHHHCCCCC
QTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
CCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]