Click here to switch to the map view.

The map label for this gene is rsd [H]

Identifier: 194736012

GI number: 194736012

Start: 4248752

End: 4249240

Strand: Reverse

Name: rsd [H]

Synonym: SeSA_A4376

Alternate gene names: 194736012

Gene position: 4249240-4248752 (Counterclockwise)

Preceding gene: 194735704

Following gene: 194734581

Centisome position: 90.24

GC content: 49.69

Gene sequence:

>489_bases
ATGCTAAACCAGCTGGAAAACCTGACGGAGCGCGTTGGCGGAAGCAACAAACTGGTCGATCGCTGGCTGGATGTACGTAA
GCACCTGCTCGTGGCTTACTACAACCTGGTTGGCATTAAGCCTGGCAAAGAATCGTACATGCGGCTGAATGAAAAAGCGC
TGGATAATTTTTGTCAGAGCCTGGTCGATTACCTTTCCGCCGGGCACTTCAGTATTTATGAACGTATTCTCCATAAATTG
GAAGGAAACGGTCAGCTTTTACATGCGGCAAAAATCTGGCCGCTGCTGGAAGATAATACGCAGCGCATTATGGATTATTA
CGACACCAGCCTGGAAACTGCCATCGATCACGATAATTGTCTGGAATTTCAACAAGCTCTGTCAGATATCGGCGAAGCGC
TGGAAGCCCGCTTTGTGCTGGAAGACAAGCTGATTATGCTGGTGTTTGACGCGATGCACGACGGCGCCAGAGTCAAACGT
CCCGCTTGA

Upstream 100 bases:

>100_bases
CGATCCATAGCTCTTGCACTACCTTTGCTTCACTGGCATGTTGTTAACATTATTTTTACATTCATGGCGAGCAGCCTTTA
TCTAACTTGCGGAGACAATC

Downstream 100 bases:

>100_bases
GTTCTGCGCGAGTAACGGGTAGTTTACTTCAGCCCCCTCTTCGGAGGGGCGGTTATCTTGTCGGAGTGCTAATTTTCCAC
AAAAGCGTTCGTGATGCGTC

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA

Sequences:

>Translated_162_residues
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA
>Mature_162_residues
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=162, Percent_Identity=88.2716049382716, Blast_Score=286, Evalue=6e-79,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18653; Mature: 18653

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC
HHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHCCHHHCHHHHHHHHHHHHHHHHCCCHHH
LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC
HHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHCCHHHCHHHHHHHHHHHHHHHHCCCHHH
LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA