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The map label for this gene is lpfD [H]

Identifier: 194735553

GI number: 194735553

Start: 202888

End: 203964

Strand: Reverse

Name: lpfD [H]

Synonym: SeSA_A0193

Alternate gene names: 194735553

Gene position: 203964-202888 (Counterclockwise)

Preceding gene: 194736076

Following gene: 194736989

Centisome position: 4.33

GC content: 52.27

Gene sequence:

>1077_bases
ATGAAGAATTTATGGATGCTGCTGGCGTTGGCGCTATTTTCAGGCCATGCGCTGGCAGACGGAACGATGGGCAACGGAAG
CGGCTGGTGTCAACCAACCAGCGGCACGCATGATTTTCCTTTTAGTTTTAATCAAACCATTACCGATACGGATGGGAACC
AGACGGGAACCATCGTTGAAGAGCACTGGTCAGCAGGCGGAGAATATTCGGCTAAATGCGACTGCGATAACAGTGATTAT
CGCGGGTACAACTATTTCACCGCGACCACCGGCGATCTGACGCAGAAAGGCACGCACAGCGAGACGCGATACTACGGACA
TATGGATTACTATGTCCTCGTGACAGGCAAACTGGAAATTGGTACCGAAGCGTATATAGCCGGGAAGCTTGGCGAATATA
TTCCCGTCCCGTTTTCCTCAATCAGCAATAATGATGCCTCCGCAGGCGGCTGTGGCGATGCAGAAATGAAATCAATGACG
GCGGGTAATAAAGGCACGGTAAGGATTTATATTACTCATCCTTTGGTCGGAGAAATCTCGATCCCGCAAACAACGATCAT
GAATCTCTATTTATCAAAAACGCCGGGCAGCAGTGGAGATAATATTCCCCCCTCCATTCCCCCTATCGCGCACGTCACCA
TGTCCGGGACCATTACCGTGCCGCAGTCCTGTTCCATCAACGCCGGGCAGGTTATCGAGGTCAGGCTGCCGGATATTGAG
GGCAAAGATATTCGTCACCTCGGCGACAGTCCGCAGAACTCGCACGTCACCACTCAGGTAAACTTTACCTGTAGCAACGT
GGCGGACGGCACCAACCTGTCAATGTCATTGAATGGAGAAACCGATCCGCACAACCCGGAATACCTGAAAACCGACAATG
AGAATTTAGGGATACGGATTTCCGATAAATACGATAAGACCATCGTTCCCGGCGGCAGCGCCGAATTGCCGATTGAAGAT
TACGCCGACGGTAGAGGCAGCACCGAGTTCACCGCCGCGCCGGTCAATACCACCGGACATGTTCCCCACACCGGAGAATA
CCAGGCTACCGCCACGCTGGAGATTCAGATTCGCTGA

Upstream 100 bases:

>100_bases
ACTGGGGAAGCGCCTCTTGCCGCGCGGATTACCGTCTGGATATCAGCAAAAATATGAACGGCATAGTGATGGCGAACGCC
GTCTGCCAGTGAGGAACACA

Downstream 100 bases:

>100_bases
GAGAAGCGTTGGGTTTCAGCAAGCCTCCCCCTACAGACCCGTAACCCATTGATATTACGGCCCCGTAGATGGGGTGAAGC
GAAGTGCAACCCAACGCCCC

Product: putative fimbrial protein precurosr

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKNLWMLLALALFSGHALADGTMGNGSGWCQPTSGTHDFPFSFNQTITDTDGNQTGTIVEEHWSAGGEYSAKCDCDNSDY
RGYNYFTATTGDLTQKGTHSETRYYGHMDYYVLVTGKLEIGTEAYIAGKLGEYIPVPFSSISNNDASAGGCGDAEMKSMT
AGNKGTVRIYITHPLVGEISIPQTTIMNLYLSKTPGSSGDNIPPSIPPIAHVTMSGTITVPQSCSINAGQVIEVRLPDIE
GKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSMSLNGETDPHNPEYLKTDNENLGIRISDKYDKTIVPGGSAELPIED
YADGRGSTEFTAAPVNTTGHVPHTGEYQATATLEIQIR

Sequences:

>Translated_358_residues
MKNLWMLLALALFSGHALADGTMGNGSGWCQPTSGTHDFPFSFNQTITDTDGNQTGTIVEEHWSAGGEYSAKCDCDNSDY
RGYNYFTATTGDLTQKGTHSETRYYGHMDYYVLVTGKLEIGTEAYIAGKLGEYIPVPFSSISNNDASAGGCGDAEMKSMT
AGNKGTVRIYITHPLVGEISIPQTTIMNLYLSKTPGSSGDNIPPSIPPIAHVTMSGTITVPQSCSINAGQVIEVRLPDIE
GKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSMSLNGETDPHNPEYLKTDNENLGIRISDKYDKTIVPGGSAELPIED
YADGRGSTEFTAAPVNTTGHVPHTGEYQATATLEIQIR
>Mature_358_residues
MKNLWMLLALALFSGHALADGTMGNGSGWCQPTSGTHDFPFSFNQTITDTDGNQTGTIVEEHWSAGGEYSAKCDCDNSDY
RGYNYFTATTGDLTQKGTHSETRYYGHMDYYVLVTGKLEIGTEAYIAGKLGEYIPVPFSSISNNDASAGGCGDAEMKSMT
AGNKGTVRIYITHPLVGEISIPQTTIMNLYLSKTPGSSGDNIPPSIPPIAHVTMSGTITVPQSCSINAGQVIEVRLPDIE
GKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSMSLNGETDPHNPEYLKTDNENLGIRISDKYDKTIVPGGSAELPIED
YADGRGSTEFTAAPVNTTGHVPHTGEYQATATLEIQIR

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787173, Length=342, Percent_Identity=27.7777777777778, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI145693100, Length=196, Percent_Identity=26.530612244898, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789534, Length=245, Percent_Identity=28.1632653061224, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38380; Mature: 38380

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLWMLLALALFSGHALADGTMGNGSGWCQPTSGTHDFPFSFNQTITDTDGNQTGTIVE
CCHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCEEE
EHWSAGGEYSAKCDCDNSDYRGYNYFTATTGDLTQKGTHSETRYYGHMDYYVLVTGKLEI
HHHCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECEEEEEEEEEEEEE
GTEAYIAGKLGEYIPVPFSSISNNDASAGGCGDAEMKSMTAGNKGTVRIYITHPLVGEIS
CCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCEEE
IPQTTIMNLYLSKTPGSSGDNIPPSIPPIAHVTMSGTITVPQSCSINAGQVIEVRLPDIE
CCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCCCEEEEECCCCC
GKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSMSLNGETDPHNPEYLKTDNENLGIRI
CCHHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEE
SDKYDKTIVPGGSAELPIEDYADGRGSTEFTAAPVNTTGHVPHTGEYQATATLEIQIR
ECCCCCEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MKNLWMLLALALFSGHALADGTMGNGSGWCQPTSGTHDFPFSFNQTITDTDGNQTGTIVE
CCHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCEEE
EHWSAGGEYSAKCDCDNSDYRGYNYFTATTGDLTQKGTHSETRYYGHMDYYVLVTGKLEI
HHHCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECEEEEEEEEEEEEE
GTEAYIAGKLGEYIPVPFSSISNNDASAGGCGDAEMKSMTAGNKGTVRIYITHPLVGEIS
CCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCEEE
IPQTTIMNLYLSKTPGSSGDNIPPSIPPIAHVTMSGTITVPQSCSINAGQVIEVRLPDIE
CCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCCCEEEEECCCCC
GKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSMSLNGETDPHNPEYLKTDNENLGIRI
CCHHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEE
SDKYDKTIVPGGSAELPIEDYADGRGSTEFTAAPVNTTGHVPHTGEYQATATLEIQIR
ECCCCCEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]