| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
Click here to switch to the map view.
The map label for this gene is lpfC [H]
Identifier: 194736076
GI number: 194736076
Start: 203973
End: 206519
Strand: Reverse
Name: lpfC [H]
Synonym: SeSA_A0194
Alternate gene names: 194736076
Gene position: 206519-203973 (Counterclockwise)
Preceding gene: 194736071
Following gene: 194735553
Centisome position: 4.39
GC content: 55.12
Gene sequence:
>2547_bases ATGCGCAAAGGGCAACACAGGGGATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCGCACATGT TGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAACACCATGGGCAGGCGAATCGCACAAGCGTCGATCTGTCGA CATTTGATAACGACAAAAGCCAACTTCCTGGCACCTATTACGTCACTATCATTATCAACAAAACAGAAATCGGCGCGCGA AACGTTGATTTTCAACTCACGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTTCAGGAACTAAAAGA TAACGGCGTCAAAACCGACCTTTTTCCAACGCTGGAGAGTGAAAAAGGCTGCGTCGATCTCAGCGCTATCCCCGGCGCCA GCCAGCAGTTTGATTTTCAGCAACAGGCATTATCGATAAGCATCCCTCAACTCTACATCGCCAACAACGCGCGCGGCTAC GTGCCGCCGGAAAAGTGGCAGGAGGGGATTACCGCGCTAATGCTGAACTACAGTTTCAGCGGCTATAAAGAGTACGGTTC CAGTGACGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTTTTCGCA ACTACAGTAACTGGAGCGCAAATAACGGCGAGAGCGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGACATTATC GCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGGCCTCCA GCTCACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGTTCAAACG CGCAGGTTATCGTGCGGCAAAACGGTTATATCGCCTATCAAACTGCCGTTTCGCCGGGCGAATTTGAAATCAACGATATG TTTCCCACCGGCAGCAACGGCGACTACGACGTGACGGTAAAAGAAGCCGACGGTAGCGAACAGCATTTTATCGTGCCCTA CTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATATCGTGATTACGACAACC ACACGCTGGACGACTTCGGCCAGGCGACCCTGCTGTACGGCCTGCCGTGGGGTATCACGCTGTACGGCGGCAGCCAGATT GCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGACGGTAT CTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAGCCGGGCAATCCTGGCGCGTCCGCTACAGCAAGGGCGTCGTCA GTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATCAACCCG GACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCTTCAGTCAACCAGCAAATTAGCGATACGCT CGGTTCCTTAACGCTAAGTTGGGTAAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAATCTCTGAGCGCCAACTACA ACAATAGCTGGGGCCCGGTGAGCTATACGTTAAGCTACAGCTATAACAAAAACACCTACCAGTACCGATCGGATAATGAC GATGATGATAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGCTGTCGCTGCATGTTCCGTTTACGGTGTT CGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCTACGGTGAACAGCACCACCCTTAGCGGCA CCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAGAGCCACAGCACACAAGACGGTGATTCCGGCGGGGTAAAC GCCAGCTACAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAGGTCAGCTACGGCAT CAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTAAAGCGC CCGGCGCCAGCGGCGTTTCAGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCCAACGTC ACTCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCCGACAACGTGGATATTCCGCTCAACAACCAGAC CGTCTACCCGACGCGTAATGCGGTGGTGCGCGCGGCGTATGACACGCATAAGGGCTATCGCGCGCTGTTAACGCTGACGC GCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATCGTCGGC GATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTCCTGGTGAACTGGGGAAGCGCCTCTTGCCGCGC GGATTACCGTCTGGATATCAGCAAAAATATGAACGGCATAGTGATGGCGAACGCCGTCTGCCAGTGA
Upstream 100 bases:
>100_bases CCAGCGGCCCGATCGCCTGGTCTATCATCAACGATTTTGGCGGTACTGGCCCCGAACATAAACAAACGCCTTGAGAAGAG TGACAGGGATGAGAGTGCCG
Downstream 100 bases:
>100_bases GGAACACAATGAAGAATTTATGGATGCTGCTGGCGTTGGCGCTATTTTCAGGCCATGCGCTGGCAGACGGAACGATGGGC AACGGAAGCGGCTGGTGTCA
Product: outer membrane usher protein FimD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MRKGQHRGFYLSRCAVCIALGSTFAHVAWARDYFNPAFIEHHGQANRTSVDLSTFDNDKSQLPGTYYVTIIINKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSAIPGASQQFDFQQQALSISIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSDDSDDAESKYLALQPGFNLGPWRFRNYSNWSANNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYDNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEAGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSANYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRALLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ
Sequences:
>Translated_848_residues MRKGQHRGFYLSRCAVCIALGSTFAHVAWARDYFNPAFIEHHGQANRTSVDLSTFDNDKSQLPGTYYVTIIINKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSAIPGASQQFDFQQQALSISIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSDDSDDAESKYLALQPGFNLGPWRFRNYSNWSANNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYDNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEAGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSANYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRALLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ >Mature_848_residues MRKGQHRGFYLSRCAVCIALGSTFAHVAWARDYFNPAFIEHHGQANRTSVDLSTFDNDKSQLPGTYYVTIIINKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSAIPGASQQFDFQQQALSISIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSDDSDDAESKYLALQPGFNLGPWRFRNYSNWSANNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYDNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEAGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSANYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRALLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ
Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=891, Percent_Identity=38.9450056116723, Blast_Score=578, Evalue=1e-166, Organism=Escherichia coli, GI1787172, Length=865, Percent_Identity=39.5375722543353, Blast_Score=574, Evalue=1e-165, Organism=Escherichia coli, GI1786744, Length=875, Percent_Identity=38.2857142857143, Blast_Score=573, Evalue=1e-164, Organism=Escherichia coli, GI1789533, Length=864, Percent_Identity=37.6157407407407, Blast_Score=541, Evalue=1e-155, Organism=Escherichia coli, GI1786332, Length=883, Percent_Identity=30.8040770101925, Blast_Score=364, Evalue=1e-101, Organism=Escherichia coli, GI1788427, Length=776, Percent_Identity=31.701030927835, Blast_Score=350, Evalue=2e-97, Organism=Escherichia coli, GI87081778, Length=809, Percent_Identity=27.8121137206428, Blast_Score=268, Evalue=1e-72, Organism=Escherichia coli, GI1789610, Length=780, Percent_Identity=26.2820512820513, Blast_Score=168, Evalue=2e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 93718; Mature: 93718
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGQHRGFYLSRCAVCIALGSTFAHVAWARDYFNPAFIEHHGQANRTSVDLSTFDNDKS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCEEEEEEECCCCHH QLPGTYYVTIIINKTEIGARNVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLES HCCCEEEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCCCCC EKGCVDLSAIPGASQQFDFQQQALSISIPQLYIANNARGYVPPEKWQEGITALMLNYSFS CCCEEEEECCCCCCCCCCHHHHHEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEECCCC GYKEYGSSDDSDDAESKYLALQPGFNLGPWRFRNYSNWSANNGESGSWNSVYNYLQRDII CHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQ HHHHHCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEE NGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAK CCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHCCCEE YSVTVGKYRDYDNHTLDDFGQATLLYGLPWGITLYGGSQIAGDKYQSVAFGVGQNMQMLG EEEEECCCCCCCCCCHHHCCCEEEEEECCCEEEEECCCEECCCCHHEEEECCCCCEEEEE AISLDGIWSHAKFDDGRKEAGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP EEEECCCCCCCCCCCCHHHCCCCEEEEEECCEEECCCEEEEEEEEECCCCHHHHHHHCCC DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSANYNNSWGPV CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE SYTLSYSYNKNTYQYRSDNDDDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTR EEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEHHHHHHHHHHHCCC KHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVNASYKGTYANLNAGYNQSPDS CCCCEECCEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCC QQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV CEEEECCCCCEEEECCCCEECCCCCCEEEEEECCCCCCCEECCCCCCEECCCCEEECCCC TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRALLTLTRSNGEPV CCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEEHHCCCCEEEEEEEECCCCCCC PFGATASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGI CCCCEECCCCCCCCCCEEECCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEECCCCCEE VMANAVCQ EEECEECC >Mature Secondary Structure MRKGQHRGFYLSRCAVCIALGSTFAHVAWARDYFNPAFIEHHGQANRTSVDLSTFDNDKS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCEEEEEEECCCCHH QLPGTYYVTIIINKTEIGARNVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLES HCCCEEEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCCCCC EKGCVDLSAIPGASQQFDFQQQALSISIPQLYIANNARGYVPPEKWQEGITALMLNYSFS CCCEEEEECCCCCCCCCCHHHHHEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEECCCC GYKEYGSSDDSDDAESKYLALQPGFNLGPWRFRNYSNWSANNGESGSWNSVYNYLQRDII CHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQ HHHHHCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEE NGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAK CCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHCCCEE YSVTVGKYRDYDNHTLDDFGQATLLYGLPWGITLYGGSQIAGDKYQSVAFGVGQNMQMLG EEEEECCCCCCCCCCHHHCCCEEEEEECCCEEEEECCCEECCCCHHEEEECCCCCEEEEE AISLDGIWSHAKFDDGRKEAGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP EEEECCCCCCCCCCCCHHHCCCCEEEEEECCEEECCCEEEEEEEEECCCCHHHHHHHCCC DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSANYNNSWGPV CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE SYTLSYSYNKNTYQYRSDNDDDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTR EEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEHHHHHHHHHHHCCC KHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVNASYKGTYANLNAGYNQSPDS CCCCEECCEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCC QQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV CEEEECCCCCEEEECCCCEECCCCCCEEEEEECCCCCCCEECCCCCCEECCCCEEECCCC TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRALLTLTRSNGEPV CCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEEHHCCCCEEEEEEEECCCCCCC PFGATASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGI CCCCEECCCCCCCCCCEEECCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEECCCCCEE VMANAVCQ EEECEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7721701; 11677609 [H]