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The map label for this gene is ecpD [H]

Identifier: 194734525

GI number: 194734525

Start: 396350

End: 397279

Strand: Reverse

Name: ecpD [H]

Synonym: SeSA_A0392

Alternate gene names: 194734525

Gene position: 397279-396350 (Counterclockwise)

Preceding gene: 290241785

Following gene: 194737801

Centisome position: 8.44

GC content: 46.67

Gene sequence:

>930_bases
ATGCTTCTGAAGCGAGCGCGACTTATACCGCGCGGTATTACTCTACCGGGAAAGCAGAGGCTGGGACAGTCGCTGCCACC
CTTCAATACGCCGTTTCGTATAAATAATTGTCGCTACGGTCTGGCGTTGAAACGCCAGACCATTTTCAATCGCCAGGGAG
TTGTTGAGATGAAAATGGATACCCGACATTCCGCATTATATTACTTAATAGTTTTTCTATTGCTGGCCCTACCCGCCACA
GCATCGTGGGCGAGCGTTACTATTTTGGGTAGCCGAATAATTTACCCATCAACAGCCTCCTCCGTAGATGTGCAGTTAAA
AAATAATGATGCAATACCTTATATCGTACAAACCTGGTTTGACGATGGCGATATGAATACCAGCCCGGAAAATAGTAGCG
CGATGCCGTTCATTGCCACGCCGCCGGTATTTCGTATTCAACCCAAAGCAGGCCAGGTTGTACGCGTAATTTATAACAAC
ACGAAAAAATTGCCGCAGGATCGTGAGTCAGTATTCTGGTTTAACGTATTACAGGTACCACCAACGAATATTGGCAGCGA
CGGCGGGCAAAATAAAATGTTGGTGATGCTGCGCTCAAGAATAAAACTTTTCTATCGTCCTGACGGGCTAGGTAAACCTG
ATAATCTGGCGAAAAAACTACAGATTAAAACGGTAAATAAGGGTTCCGGAAAAAGCGGTATTGTTATTGTTAATCCGCAG
CCCTGGTTTGCCTCTTTAAGTAACCTGAATGTAAAAGTGAACGGCGCTTCGTATAACCTGGATGCTGACATGATTGCCCC
TTTTTCCAGTCAAACCTGGTGGCTGCCGGGCAAACGGTCACTCAAATCCTTCTCCGGTACAGTCACCGTTACTTTGGTTA
ACGACCTGGGCGCAAGGATAAGCGAGAGCTACGATGTCCCCCACCATTAA

Upstream 100 bases:

>100_bases
AGCGCGAAAAATGTTGAAGTCCAATTACTCGACACTTCAGGGGAGCCAATCAATCTGACCGGCGGCTTTACTGGCGACGG
CGACCTACAGCTGGAACCAA

Downstream 100 bases:

>100_bases
TTTGAACCGCAAAAGCCTTGCGCTATTGATCGCCATAGTTTGCTCAGGCTCCGCGCAGGGTGAAGAGTATTATTTTGATC
CTGCGCTACTTCAGGGGGCC

Product: fimbrial chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLLKRARLIPRGITLPGKQRLGQSLPPFNTPFRINNCRYGLALKRQTIFNRQGVVEMKMDTRHSALYYLIVFLLLALPAT
ASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNN
TKKLPQDRESVFWFNVLQVPPTNIGSDGGQNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVIVNPQ
PWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDLGARISESYDVPHH

Sequences:

>Translated_309_residues
MLLKRARLIPRGITLPGKQRLGQSLPPFNTPFRINNCRYGLALKRQTIFNRQGVVEMKMDTRHSALYYLIVFLLLALPAT
ASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNN
TKKLPQDRESVFWFNVLQVPPTNIGSDGGQNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVIVNPQ
PWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDLGARISESYDVPHH
>Mature_309_residues
MLLKRARLIPRGITLPGKQRLGQSLPPFNTPFRINNCRYGLALKRQTIFNRQGVVEMKMDTRHSALYYLIVFLLLALPAT
ASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNN
TKKLPQDRESVFWFNVLQVPPTNIGSDGGQNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVIVNPQ
PWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDLGARISESYDVPHH

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=248, Percent_Identity=39.9193548387097, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788428, Length=258, Percent_Identity=36.8217054263566, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790771, Length=231, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1786936, Length=183, Percent_Identity=30.6010928961749, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787171, Length=229, Percent_Identity=29.6943231441048, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788677, Length=218, Percent_Identity=32.5688073394495, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786743, Length=240, Percent_Identity=30.8333333333333, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789532, Length=235, Percent_Identity=27.2340425531915, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082203, Length=234, Percent_Identity=28.2051282051282, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 34433; Mature: 34433

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKRARLIPRGITLPGKQRLGQSLPPFNTPFRINNCRYGLALKRQTIFNRQGVVEMKMD
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCEEECEEEEHHHHHCCCCEEEEECC
TRHSALYYLIVFLLLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWF
CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEECCCCCCEEEEEECCCCCCCEEEEEEE
DDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVP
CCCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PTNIGSDGGQNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVIVNPQ
CCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCHHHHHEEEEEEECCCCCCCCEEEECCC
PWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDLGARI
CHHHHHCCCEEEEECCEEECCHHHCCCCCCCEEECCCCHHHHHCCCEEEEEEECCCCCHH
SESYDVPHH
HCCCCCCCC
>Mature Secondary Structure
MLLKRARLIPRGITLPGKQRLGQSLPPFNTPFRINNCRYGLALKRQTIFNRQGVVEMKMD
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCEEECEEEEHHHHHCCCCEEEEECC
TRHSALYYLIVFLLLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWF
CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEECCCCCCEEEEEECCCCCCCEEEEEEE
DDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVP
CCCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PTNIGSDGGQNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVIVNPQ
CCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCHHHHHEEEEEEECCCCCCCCEEEECCC
PWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDLGARI
CHHHHHCCCEEEEECCEEECCHHHCCCCCCCEEECCCCHHHHHCCCEEEEEEECCCCCHH
SESYDVPHH
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]