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The map label for this gene is ynfD [H]

Identifier: 194734287

GI number: 194734287

Start: 1547009

End: 1547314

Strand: Reverse

Name: ynfD [H]

Synonym: SeSA_A1602

Alternate gene names: 194734287

Gene position: 1547314-1547009 (Counterclockwise)

Preceding gene: 194735266

Following gene: 194738045

Centisome position: 32.86

GC content: 54.58

Gene sequence:

>306_bases
ATGAAAATCGCAACTGCAATAGCCGCTCTGGCGTTAGTCAGCGCCCCCTCGCTGGTGATGGCGGCACCGGGATCGTGCGA
GAGAGTAAAAAGCGATATTGAACAACGTATCATCAATAACGGCGTGCCGGCAGATAATTTTACGCTCACTATCGTTCCTA
ACGACCAGGCCGATCAGCCGGACTCACAGGTGGTGGGCCATTGCGCGAACGACACGCATAAAATTCTTTATACCCGCACC
AGCAGCGGCAATGCGCCAGCCAATACCTCTCCCGCTCAAGACGGTTCATCCGCCGAACCGCAATAA

Upstream 100 bases:

>100_bases
CACCAGGATGAAAAGATATTTATCATCATATTAGCAAATACAGTTATTTACACGAAAAATGCTAAGCTTAGAACATCGTC
ATTAATCACAGGAGTTCATG

Downstream 100 bases:

>100_bases
TCTCCTCCTGCCCTCCGGGTCCGGAGGGTAACGCTCTTTGACATGGATTAATAATCCTTACTCCCAAAGGGGTAAACTCA
TTACATCATTAGCATGTTAA

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTRT
SSGNAPANTSPAQDGSSAEPQ

Sequences:

>Translated_101_residues
MKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTRT
SSGNAPANTSPAQDGSSAEPQ
>Mature_101_residues
MKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTRT
SSGNAPANTSPAQDGSSAEPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081940, Length=101, Percent_Identity=71.2871287128713, Blast_Score=135, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010595
- ProDom:   PD336997 [H]

Pfam domain/function: PF06649 DUF1161 [H]

EC number: NA

Molecular weight: Translated: 10444; Mature: 10444

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQP
CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
DSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQP
CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
DSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784 [H]