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The map label for this gene is ysgA [H]

Identifier: 194334722

GI number: 194334722

Start: 2105735

End: 2106532

Strand: Reverse

Name: ysgA [H]

Synonym: Paes_1923

Alternate gene names: 194334722

Gene position: 2106532-2105735 (Counterclockwise)

Preceding gene: 194334723

Following gene: 194334721

Centisome position: 83.83

GC content: 54.89

Gene sequence:

>798_bases
ATGACTTCGCAACGTTATCCTTACGCTGCCAAAGGGATGATCAAGCGCTTTGCCAGACTTCATCAGAAAAAGTATCGGGA
GAGAGAGGGCTGTTTTCTTGCCGAGGGTCTGCGGACAGTGAGCGAACTGCTTCGGCAGATGCCATCCGTAGAGGCTCTTG
TCGCCTTGTTTGTTGGTGCCGACCAGCTCGCTCTCATACCCTTTCCGGAGCGCTACCGTGAGAAACTGTTCCTGCTTGAG
CAGGAAGAGATGAGACGCCTTGCCGCAACGACAACATCACAGGGTGTTATTGGGGTTTTTCGTATGGGGTCAGAAGACAG
GCTTTCCCGGGCTGATGAAGGCCCCTCTCTCGTTGTTGCGCTCGATGATGTGCAGGATCCCGGTAATGTCGGCACCATTA
TCCGCACGGCGGCATGGTTCGGCGCTGCAGCCGTCATTTCGGGACGGGGGACGGCAGACTGCTATAACCCGAAATCCGTT
CGGTCGAGTGCGGGAAGCCTCTACGGTCTGGAGCTTTACAGTGCCGATGATCTCGGTGTGGAACTCGGCCGTTTACAAGC
CCGGGGTTTTCATATCGTGACTGCATCGTTGCAGGGGACCGATATTCGTGCTTTCAAGGTGTGGCCACCCAGGCTTGTTC
TTGTTATAGGAAACGAAGCAAACGGTGTCAGCCTGCCGATTCAGAAGATTTCGGATAGCATGGTCATGATTCCGCACGGC
CCTGCCAGTCCTCATGTCGAGTCTCTTAACGCTGCTGTATCAGCCGCCATTCTGATTTCCCGCTTTTCTCTTGGCTGA

Upstream 100 bases:

>100_bases
ATCCGGGCAGTTTTTCAACGGGGAGTTCTTCGCCTCCATCAGAGTTTTCCCATAAGCCGGAAGCGGTTCTCGATCAGTTT
AAACGTTCATTGAAACGCAA

Downstream 100 bases:

>100_bases
TCTGTCTTCAGTGAGATCAGAAGCCTATAGTATTTTCGTGCTGCATTTTGACGTCAATGCTTACAGCAGGCGATTTTTTT
ATACTTTTTAAGTGATGTCC

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTSQRYPYAAKGMIKRFARLHQKKYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGADQLALIPFPERYREKLFLLE
QEEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVALDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSV
RSSAGSLYGLELYSADDLGVELGRLQARGFHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHG
PASPHVESLNAAVSAAILISRFSLG

Sequences:

>Translated_265_residues
MTSQRYPYAAKGMIKRFARLHQKKYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGADQLALIPFPERYREKLFLLE
QEEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVALDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSV
RSSAGSLYGLELYSADDLGVELGRLQARGFHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHG
PASPHVESLNAAVSAAILISRFSLG
>Mature_264_residues
TSQRYPYAAKGMIKRFARLHQKKYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGADQLALIPFPERYREKLFLLEQ
EEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVALDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSVR
SSAGSLYGLELYSADDLGVELGRLQARGFHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHGP
ASPHVESLNAAVSAAILISRFSLG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=163, Percent_Identity=30.6748466257669, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI8922534, Length=301, Percent_Identity=24.5847176079734, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28834; Mature: 28702

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQRYPYAAKGMIKRFARLHQKKYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
DQLALIPFPERYREKLFLLEQEEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVA
CCEEEECCCHHHHHHHEEECHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCEEEEE
LDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLELYSADDLGV
EECCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCH
ELGRLQARGFHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHG
HHHHEEECCEEEEEEEECCCEEEEEEECCCEEEEEECCCCCCCCCCHHHCCCCEEEEECC
PASPHVESLNAAVSAAILISRFSLG
CCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSQRYPYAAKGMIKRFARLHQKKYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
DQLALIPFPERYREKLFLLEQEEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVA
CCEEEECCCHHHHHHHEEECHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCEEEEE
LDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLELYSADDLGV
EECCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCH
ELGRLQARGFHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHG
HHHHEEECCEEEEEEEECCCEEEEEEECCCEEEEEECCCCCCCCCCHHHCCCCEEEEECC
PASPHVESLNAAVSAAILISRFSLG
CCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]