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The map label for this gene is rbn [C]

Identifier: 194334278

GI number: 194334278

Start: 1610752

End: 1612020

Strand: Reverse

Name: rbn [C]

Synonym: Paes_1471

Alternate gene names: 194334278

Gene position: 1612020-1610752 (Counterclockwise)

Preceding gene: 194334279

Following gene: 194334277

Centisome position: 64.15

GC content: 48.15

Gene sequence:

>1269_bases
ATGCCTTCATCTGAACATTCATTCATCTCTGTACCACATGACGCATTGAGGTCTGTGCGTTCTTTTCTGGCTTTTTTTTC
AAAAAGTTTCAATCGCGATCAGGTGCTGCTCAGCGCCGGTTCACTGGCTTTCCAGACCCTTCTTTCGATCGTTCCACTGA
TGGCTGTTATTTTGTCTGTTCTGAGCGTTTCGCCTGTATTTGATTCGTTCAAGCAGTATGTGGAGGAGTTCATTTTTCAG
AACTTTCTTCCCGCTTCGGGTGTGGAAGTCCAGGAGTATCTCTGGCAGTTTATCAGCAAAACCTCATCGGTGCCGACTAT
AGGCGGTCTTTCTCTTTTTATTATAGCGCTGTTTCTTATATCGACCATCGATCACACGCTTAACCGGATCTGGGGGGTCG
ATGCGCCAAGAAAATTTTTTCAGGGATTTACCCTCTACTGGACAGTGCTGACGCTCGGACCAATTTTCATAGGAAGCAGC
CTTGTTGCAACCTCGTATGTCTGGTACAACTTTTTCACCCAGGGCGCGCTGGCTGACGTGCAGGCAAAAACACTTTTGCT
GTTGCCGGTTATGAATACCTTTCTGGCATTTTTTCTTCTTTATATCCTGGTGCCGAACCGCAAAGTAAAGTTCGTTCATG
CTTTCTCCGGAGCGATACTTGCGACCCTCTTGTTTGAATTCTCCAAGCGGTGGTTTGCGTTTTACGTCTCGCATGTGGCG
ACCTTCGAACATATCTACGGAGCCCTTTCAGTCATTCCTCTGCTGTTTTTCTGGATCTATCTGATCTGGGTTGTCGCCCT
GAGCGGTGCCGAATTTGTCTATTGTCTCGGAGTAGTGCACCCTGAACGGGCAGTTGTCAGGGAGTTTCATCCGCTTTTGG
GTATCAGCGCCGTACTTCTTGTTATCGAAAGGATCTCTGCCGCCCAATCCTCTGGAGGATTTCTCACTATGAACACGCTT
GAAGACCTGTGTCGGAGTGTTACCCGGATGCAGCTGCGCCGGATTACCGATTTTCTGCTTCAGCAGAATATCATTCATAA
AACAGAAGAAGGATCCTTTGCGTTAAGCGCGGACCTGCATACATTAACACTGTATGATCTGTATGCGATACTGCCTGCAG
ACCTTGTCCAGCCGAAAGATCCCGAGACGAGCGATTCGCATTTTGGACAGGATCTTTCCGGACTCGAACAGAATATCATC
CAATGCCTGCAGCATGCGATGCATCAGCCGCTTGCTGCGTTTTTGAACACAGCGACCCGTACACTATGA

Upstream 100 bases:

>100_bases
ACAGCTCTTCGGGCCGTTTCCCGGTCGGATGCATGATATATAGATGAAAAAGAGTAGATTGAGAGCAGGGAAAGACAAGC
CAAACCGGCCGTAAGGAGTT

Downstream 100 bases:

>100_bases
GCTATCAGGTTATAGCCAGAAAATACAGACCGAGTAAATTCGCCGATATTACCGCTCAGGAGCATATCACGCACACCATC
CAGAATGCGCTTCGTCTCGA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MPSSEHSFISVPHDALRSVRSFLAFFSKSFNRDQVLLSAGSLAFQTLLSIVPLMAVILSVLSVSPVFDSFKQYVEEFIFQ
NFLPASGVEVQEYLWQFISKTSSVPTIGGLSLFIIALFLISTIDHTLNRIWGVDAPRKFFQGFTLYWTVLTLGPIFIGSS
LVATSYVWYNFFTQGALADVQAKTLLLLPVMNTFLAFFLLYILVPNRKVKFVHAFSGAILATLLFEFSKRWFAFYVSHVA
TFEHIYGALSVIPLLFFWIYLIWVVALSGAEFVYCLGVVHPERAVVREFHPLLGISAVLLVIERISAAQSSGGFLTMNTL
EDLCRSVTRMQLRRITDFLLQQNIIHKTEEGSFALSADLHTLTLYDLYAILPADLVQPKDPETSDSHFGQDLSGLEQNII
QCLQHAMHQPLAAFLNTATRTL

Sequences:

>Translated_422_residues
MPSSEHSFISVPHDALRSVRSFLAFFSKSFNRDQVLLSAGSLAFQTLLSIVPLMAVILSVLSVSPVFDSFKQYVEEFIFQ
NFLPASGVEVQEYLWQFISKTSSVPTIGGLSLFIIALFLISTIDHTLNRIWGVDAPRKFFQGFTLYWTVLTLGPIFIGSS
LVATSYVWYNFFTQGALADVQAKTLLLLPVMNTFLAFFLLYILVPNRKVKFVHAFSGAILATLLFEFSKRWFAFYVSHVA
TFEHIYGALSVIPLLFFWIYLIWVVALSGAEFVYCLGVVHPERAVVREFHPLLGISAVLLVIERISAAQSSGGFLTMNTL
EDLCRSVTRMQLRRITDFLLQQNIIHKTEEGSFALSADLHTLTLYDLYAILPADLVQPKDPETSDSHFGQDLSGLEQNII
QCLQHAMHQPLAAFLNTATRTL
>Mature_421_residues
PSSEHSFISVPHDALRSVRSFLAFFSKSFNRDQVLLSAGSLAFQTLLSIVPLMAVILSVLSVSPVFDSFKQYVEEFIFQN
FLPASGVEVQEYLWQFISKTSSVPTIGGLSLFIIALFLISTIDHTLNRIWGVDAPRKFFQGFTLYWTVLTLGPIFIGSSL
VATSYVWYNFFTQGALADVQAKTLLLLPVMNTFLAFFLLYILVPNRKVKFVHAFSGAILATLLFEFSKRWFAFYVSHVAT
FEHIYGALSVIPLLFFWIYLIWVVALSGAEFVYCLGVVHPERAVVREFHPLLGISAVLLVIERISAAQSSGGFLTMNTLE
DLCRSVTRMQLRRITDFLLQQNIIHKTEEGSFALSADLHTLTLYDLYAILPADLVQPKDPETSDSHFGQDLSGLEQNIIQ
CLQHAMHQPLAAFLNTATRTL

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=261, Percent_Identity=36.7816091954023, Blast_Score=182, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1471_PROA2 (B4S8V4)

Other databases:

- EMBL:   CP001108
- RefSeq:   YP_002016138.1
- GeneID:   6460414
- GenomeReviews:   CP001108_GR
- KEGG:   paa:Paes_1471
- HOGENOM:   HBG405288
- OMA:   FELSKKW
- ProtClustDB:   CLSK571629
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47435; Mature: 47304

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1d67cdf8)-; HASH(0x1d478778)-; HASH(0x1debed50)-; HASH(0x1e21ff2c)-; HASH(0x1e222c84)-; HASH(0x1cb74ea4)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CH
>Mature Secondary Structure 
PSSEHSFISVPHDALRSVRSFLAFFSKSFNRDQVLLSAGSLAFQTLLSIVPLMAVILSV
CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSVSPVFDSFKQYVEEFIFQNFLPASGVEVQEYLWQFISKTSSVPTIGGLSLFIIALFLI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
STIDHTLNRIWGVDAPRKFFQGFTLYWTVLTLGPIFIGSSLVATSYVWYNFFTQGALADV
HHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
QAKTLLLLPVMNTFLAFFLLYILVPNRKVKFVHAFSGAILATLLFEFSKRWFAFYVSHVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFEHIYGALSVIPLLFFWIYLIWVVALSGAEFVYCLGVVHPERAVVREFHPLLGISAVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
VIERISAAQSSGGFLTMNTLEDLCRSVTRMQLRRITDFLLQQNIIHKTEEGSFALSADLH
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHH
TLTLYDLYAILPADLVQPKDPETSDSHFGQDLSGLEQNIIQCLQHAMHQPLAAFLNTATR
HHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TL
CH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA