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The map label for this gene is rutD [H]

Identifier: 194334188

GI number: 194334188

Start: 1502001

End: 1502807

Strand: Reverse

Name: rutD [H]

Synonym: Paes_1380

Alternate gene names: 194334188

Gene position: 1502807-1502001 (Counterclockwise)

Preceding gene: 194334189

Following gene: 194334184

Centisome position: 59.8

GC content: 47.34

Gene sequence:

>807_bases
ATGCTTCATTACAGAATTCACGAATTGGCAGAAGATGCCCCATGGGTTGTCTTTGTTCATGGAGCGGGTGGCAGCTCTTC
TATCTGGTTTTTGCAGGTCAAGGATTTCAGCAGGAATTTCAATGTTCTGATGGTTGATCTGCGTGGCCACGGCAAATCCT
CCTCTCTTCATCATAAGGGTCAGTATAATTTTGAGGACATTACCCTTGATATTCTGGAGGTTCTGGATCATCTCAAGATA
GATCGCGCGCATTTTATCGGGATTTCTCTCGGGACGATTCTGATACGACAGCTCGGAGAGCTCGCCCCTGAGCGGGTTTG
TTCGATGGTTATGGGTGGCGCTATTATCCGGCTCAATGTGAGGGCTAAAGTGCTTGTTGCGGTTGGCAATATGTTTAAGC
GGTTTATCCCCTACATGTGGCTCTACAGCTTTTTTGCCTGGATCATCATGCCTCGTGCCAGGCATAAAAAGTCAAGGACC
CTGTTTGTCAACGAGGCGAAAAAAATCGCACAGAAGGAGTTTATGCGCTGGTTTACACTGACCTATGAGCTTAATCCGCT
TCTGCGCTATTTCGAGGAGAAAGATACCGCTATTCCTACCCTCTATCTCATGGGGGAGGAGGATTATATGTTTCTTCCTC
CTGTGGAATATATCGTTACCCGACATAGCAATTCGTATCTGGAAGTGATTGCGAATTCAGGTCATGTCTGTAATGTCGAT
CAGCCTCAGGATTTCAACGAGCGCGCTATCCGGTTCATGCAGCTCCATTCCTTCTCTTCGCCTGTTCTGCAGGCTTCTGC
TGTATAG

Upstream 100 bases:

>100_bases
AATGTTTCGGTTGCAGCAGGGGTGGCTTTATTTGAAATGGTTAGAACTTTCCGGCAGGGCCTTTGTTGATGCCGGAGCAA
GGGGGGAATTGAATACGACA

Downstream 100 bases:

>100_bases
TTTCACTGTTGAGTTTTTTTTCCTGTATTGTAGTGGTTCATTGCATGTTCAACGCCATGAGCCACGAAGTCGAGAGCCGC
TTCCGCGCTGAGCGAGACCA

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MLHYRIHELAEDAPWVVFVHGAGGSSSIWFLQVKDFSRNFNVLMVDLRGHGKSSSLHHKGQYNFEDITLDILEVLDHLKI
DRAHFIGISLGTILIRQLGELAPERVCSMVMGGAIIRLNVRAKVLVAVGNMFKRFIPYMWLYSFFAWIIMPRARHKKSRT
LFVNEAKKIAQKEFMRWFTLTYELNPLLRYFEEKDTAIPTLYLMGEEDYMFLPPVEYIVTRHSNSYLEVIANSGHVCNVD
QPQDFNERAIRFMQLHSFSSPVLQASAV

Sequences:

>Translated_268_residues
MLHYRIHELAEDAPWVVFVHGAGGSSSIWFLQVKDFSRNFNVLMVDLRGHGKSSSLHHKGQYNFEDITLDILEVLDHLKI
DRAHFIGISLGTILIRQLGELAPERVCSMVMGGAIIRLNVRAKVLVAVGNMFKRFIPYMWLYSFFAWIIMPRARHKKSRT
LFVNEAKKIAQKEFMRWFTLTYELNPLLRYFEEKDTAIPTLYLMGEEDYMFLPPVEYIVTRHSNSYLEVIANSGHVCNVD
QPQDFNERAIRFMQLHSFSSPVLQASAV
>Mature_268_residues
MLHYRIHELAEDAPWVVFVHGAGGSSSIWFLQVKDFSRNFNVLMVDLRGHGKSSSLHHKGQYNFEDITLDILEVLDHLKI
DRAHFIGISLGTILIRQLGELAPERVCSMVMGGAIIRLNVRAKVLVAVGNMFKRFIPYMWLYSFFAWIIMPRARHKKSRT
LFVNEAKKIAQKEFMRWFTLTYELNPLLRYFEEKDTAIPTLYLMGEEDYMFLPPVEYIVTRHSNSYLEVIANSGHVCNVD
QPQDFNERAIRFMQLHSFSSPVLQASAV

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 31086; Mature: 31086

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHYRIHELAEDAPWVVFVHGAGGSSSIWFLQVKDFSRNFNVLMVDLRGHGKSSSLHHKG
CCCEEHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCC
QYNFEDITLDILEVLDHLKIDRAHFIGISLGTILIRQLGELAPERVCSMVMGGAIIRLNV
CCCHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEEC
RAKVLVAVGNMFKRFIPYMWLYSFFAWIIMPRARHKKSRTLFVNEAKKIAQKEFMRWFTL
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHE
TYELNPLLRYFEEKDTAIPTLYLMGEEDYMFLPPVEYIVTRHSNSYLEVIANSGHVCNVD
EEEHHHHHHHHHHCCCCCCEEEEECCCCEEEECCHHHEEECCCCCEEEEEECCCCEECCC
QPQDFNERAIRFMQLHSFSSPVLQASAV
CCCCHHHHHHHHHHHHCCCCCCCEECCC
>Mature Secondary Structure
MLHYRIHELAEDAPWVVFVHGAGGSSSIWFLQVKDFSRNFNVLMVDLRGHGKSSSLHHKG
CCCEEHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCC
QYNFEDITLDILEVLDHLKIDRAHFIGISLGTILIRQLGELAPERVCSMVMGGAIIRLNV
CCCHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEEC
RAKVLVAVGNMFKRFIPYMWLYSFFAWIIMPRARHKKSRTLFVNEAKKIAQKEFMRWFTL
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHE
TYELNPLLRYFEEKDTAIPTLYLMGEEDYMFLPPVEYIVTRHSNSYLEVIANSGHVCNVD
EEEHHHHHHHHHHCCCCCCEEEEECCCCEEEECCHHHEEECCCCCEEEEEECCCCEECCC
QPQDFNERAIRFMQLHSFSSPVLQASAV
CCCCHHHHHHHHHHHHCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA