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The map label for this gene is apl [H]

Identifier: 194334182

GI number: 194334182

Start: 1495812

End: 1496459

Strand: Reverse

Name: apl [H]

Synonym: Paes_1374

Alternate gene names: 194334182

Gene position: 1496459-1495812 (Counterclockwise)

Preceding gene: 194334183

Following gene: 194334181

Centisome position: 59.55

GC content: 49.85

Gene sequence:

>648_bases
ATGCTGGAATCAGTCATAGCCTATTTACAGACAGCCGATCCGTTAACGGTCTATCTGTTTCTGTTTTGCATATCTTTTCT
CGAAAATGTCATTCCGCCGGTTCCCGGTGATGTCCCTGTGGCTTTTATCGGCTACATGATTGCGTATACCGAGATCAGTT
TTGCCTGGTCCGTTGCTGTGGCTTCCCTGGGTTCCGCATTAGGTTTTATGACCATGTTTCTCTTGAGCAGGAGTGTCGGT
CTGAGGATTTATTCCAGAGGCGACACTCCGGTCAGGCATCGACTGGTCAGACTGATTCACCGTTTTTTCCCTCCCGATGA
GATGGAACAGGCCCGTCTTCGGTTTTCGACTCACGGATATCTCGCCGTTCTGGTCAATCGGTTTCTTTTTGGCTCCAGGG
CGGTTATTTCCATTATGGCCGGATTTATGCATCTCAAGGTCGCCGGCGTTTTTTTTGCCGCTCTTGCAAGTTCCGTTGTC
TGGTATGTGCTGCTGCTCTATGGCGGATACCTGCTTGGCAATAACTGGGCCCAGATCGGGACCTATATGGCGGCATATAC
CATTCCTGTTACGTTGATCATCGCTGGCGTCGCTATCTATGCAGTATTTCGATACGCCAAAAGTCGGCGGCATAAACAGG
AGGTCTAA

Upstream 100 bases:

>100_bases
TTCGATATGGGCGGCGTTGAAGATGCTTATTCTGAAGTGCAGCGCCGGGTTCTGGAACTTTAATGTGCAAGCAGGACTAT
TGCTTTAATTACATGAGCAG

Downstream 100 bases:

>100_bases
TTTGTTGCAATTTTTCCCTGATGCCTGTACCTTTAGGGTTTAATTGGACGCCTTACTACTTCAAGAAGCATTTACAGCAT
ATAATCATGGCAAAAGATTT

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MLESVIAYLQTADPLTVYLFLFCISFLENVIPPVPGDVPVAFIGYMIAYTEISFAWSVAVASLGSALGFMTMFLLSRSVG
LRIYSRGDTPVRHRLVRLIHRFFPPDEMEQARLRFSTHGYLAVLVNRFLFGSRAVISIMAGFMHLKVAGVFFAALASSVV
WYVLLLYGGYLLGNNWAQIGTYMAAYTIPVTLIIAGVAIYAVFRYAKSRRHKQEV

Sequences:

>Translated_215_residues
MLESVIAYLQTADPLTVYLFLFCISFLENVIPPVPGDVPVAFIGYMIAYTEISFAWSVAVASLGSALGFMTMFLLSRSVG
LRIYSRGDTPVRHRLVRLIHRFFPPDEMEQARLRFSTHGYLAVLVNRFLFGSRAVISIMAGFMHLKVAGVFFAALASSVV
WYVLLLYGGYLLGNNWAQIGTYMAAYTIPVTLIIAGVAIYAVFRYAKSRRHKQEV
>Mature_215_residues
MLESVIAYLQTADPLTVYLFLFCISFLENVIPPVPGDVPVAFIGYMIAYTEISFAWSVAVASLGSALGFMTMFLLSRSVG
LRIYSRGDTPVRHRLVRLIHRFFPPDEMEQARLRFSTHGYLAVLVNRFLFGSRAVISIMAGFMHLKVAGVFFAALASSVV
WYVLLLYGGYLLGNNWAQIGTYMAAYTIPVTLIIAGVAIYAVFRYAKSRRHKQEV

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24054; Mature: 24054

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESVIAYLQTADPLTVYLFLFCISFLENVIPPVPGDVPVAFIGYMIAYTEISFAWSVAV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ASLGSALGFMTMFLLSRSVGLRIYSRGDTPVRHRLVRLIHRFFPPDEMEQARLRFSTHGY
HHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH
LAVLVNRFLFGSRAVISIMAGFMHLKVAGVFFAALASSVVWYVLLLYGGYLLGNNWAQIG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHH
TYMAAYTIPVTLIIAGVAIYAVFRYAKSRRHKQEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLESVIAYLQTADPLTVYLFLFCISFLENVIPPVPGDVPVAFIGYMIAYTEISFAWSVAV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ASLGSALGFMTMFLLSRSVGLRIYSRGDTPVRHRLVRLIHRFFPPDEMEQARLRFSTHGY
HHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH
LAVLVNRFLFGSRAVISIMAGFMHLKVAGVFFAALASSVVWYVLLLYGGYLLGNNWAQIG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHH
TYMAAYTIPVTLIIAGVAIYAVFRYAKSRRHKQEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]