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The map label for this gene is 194333877

Identifier: 194333877

GI number: 194333877

Start: 1156675

End: 1157244

Strand: Reverse

Name: 194333877

Synonym: Paes_1051

Alternate gene names: NA

Gene position: 1157244-1156675 (Counterclockwise)

Preceding gene: 194333890

Following gene: 194333873

Centisome position: 46.05

GC content: 48.77

Gene sequence:

>570_bases
ATGAATCAGCATAAAAAAGTTCTCTACTGCGACGTTGAAACAACCGGCACGAACCCCGCAAAACACGGCATTATCCAAAT
AGGGGCGATCATTGAAGTTGATGGCGTTGTCGTCGAAGAGTGCAATCTGAAATGTGCGCCGCATGAAGGCGCTGAAATCA
GTCCCGATGCTCTTGCTATATCAGGCACAGAGAGAAGTGAACTGGAAAGCCGCATGACAAGCCACGAGGCCTATACCCAA
TTCCGTCACTTTCTGTCACGCCACATTGAACAATACGACAGGGAAGACAAATGCTACCCGGCCGGGTACAACATTCATTT
CGATCTGAATTTCATCCAGGCGTGGTTCCGCCATCATGGAGACAAATACGGTATCGGTTCATTCATCAACTGGAGAATGC
TCGATCCTTTACCGCTGCTCTTCATCAAAGACTTCACCAGACAGATAACCCTGCCTGATTACCGGCTTGAAACCGTCTGT
CGTCATTTCGGCATAGCACTCCATGCGCACGATGCGATGTCGGACATTCGCGCAACCAGAGAACTTCTGCTCAAACTGCT
ATACCAATAA

Upstream 100 bases:

>100_bases
ACATGCGTCGTGCTGGAAACATCGGCACAATCAATCGCATGAAAAAAATATATTGTAGCTTTCAGGTTTTCAGCCTACAA
CAGCATCAGAAAAAAGAGTG

Downstream 100 bases:

>100_bases
TGCTCCTGTTGGGATACGATAACACCCCTGTAGGGATCCTTATCGCAGCAGAAGCAGTGCAATATCGCTCATGGAAAGCA
TTCTGGACGTGTTGCTGCCC

Product: Exonuclease RNase T and DNA polymerase III

Products: NA

Alternate protein names: Exonuclease RNAse T And DNA Polymerase III

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MNQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISGTERSELESRMTSHEAYTQ
FRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGDKYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVC
RHFGIALHAHDAMSDIRATRELLLKLLYQ

Sequences:

>Translated_189_residues
MNQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISGTERSELESRMTSHEAYTQ
FRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGDKYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVC
RHFGIALHAHDAMSDIRATRELLLKLLYQ
>Mature_189_residues
MNQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISGTERSELESRMTSHEAYTQ
FRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGDKYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVC
RHFGIALHAHDAMSDIRATRELLLKLLYQ

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21857; Mature: 21857

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAI
CCCCCEEEEEEEECCCCCCHHCCEEEEEEEEEECCEEEECCCCEECCCCCCCCCCCEEEE
SGTERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHCC
DKYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIALHAHDAMSDIRATR
CCCCCCCEECEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEHHHHHHHHHHHH
ELLLKLLYQ
HHHHHHHCC
>Mature Secondary Structure
MNQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAI
CCCCCEEEEEEEECCCCCCHHCCEEEEEEEEEECCEEEECCCCEECCCCCCCCCCCEEEE
SGTERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHCC
DKYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIALHAHDAMSDIRATR
CCCCCCCEECEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEHHHHHHHHHHHH
ELLLKLLYQ
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA