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The map label for this gene is yqgF [C]

Identifier: 193213626

GI number: 193213626

Start: 2190939

End: 2191364

Strand: Direct

Name: yqgF [C]

Synonym: Cpar_1990

Alternate gene names: 193213626

Gene position: 2190939-2191364 (Clockwise)

Preceding gene: 193213624

Following gene: 193213627

Centisome position: 95.71

GC content: 60.09

Gene sequence:

>426_bases
ATGCCCCATTCCCACAAACGTATCATCGGCATCGATTTTGGCACCAAGCGTATTGGCGTTGCGAAAAGCGATCCGTTGGG
GATGTTTGCCCAGCCGGTGGGGACGTTCGATATGGAAGGCTTGCTCGGGGCACTGTCGAAGATTCGGAATGAGGAGGGAA
TTGAACGGATCGTAGTGGGCTATCCGCTGAGCGACAAGGGGGAAGAGAATCGCATGACGTCGGTCGTGGATCGCTTCGCC
GAGGAGCTTCGGGTGGCACTGCCGGAGGTGCCGGTCGAGACCATCGATGAGTACCGCTCGTCGCGCTCGGCGATGAAGCT
TCTGGCCGGTTCGGGAGCGAGCCGAAAAAAACGCAACGAGAAGGGACGGCTCGACACGGCAGCGGCCTGCCTGATTCTGC
AAAGCTGGCTGGACAGCCGCGCCTGA

Upstream 100 bases:

>100_bases
TCGCCAACCGATCCGACTGAGCCAACAGAATTTTTCAAGCCGACCTATTCATCATACCTTGTTGTTACATTATCCATTAT
CTAACTGTCCATTATCAATT

Downstream 100 bases:

>100_bases
CGGGCATTCGCAGCGCCTCTGCGAGATTTTAGGTTTAACTTTTCAAGCAGGCTTCTGTATCTTTACTTTTGGGCATCCCG
ATAGGCAGTTGCCCTTCATT

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MPHSHKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGLLGALSKIRNEEGIERIVVGYPLSDKGEENRMTSVVDRFA
EELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEKGRLDTAAACLILQSWLDSRA

Sequences:

>Translated_141_residues
MPHSHKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGLLGALSKIRNEEGIERIVVGYPLSDKGEENRMTSVVDRFA
EELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEKGRLDTAAACLILQSWLDSRA
>Mature_140_residues
PHSHKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGLLGALSKIRNEEGIERIVVGYPLSDKGEENRMTSVVDRFAE
ELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEKGRLDTAAACLILQSWLDSRA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15515; Mature: 15384

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHSHKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGLLGALSKIRNEEGIERIVVG
CCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHEEEEC
YPLSDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
KGRLDTAAACLILQSWLDSRA
CCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PHSHKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGLLGALSKIRNEEGIERIVVG
CCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHEEEEC
YPLSDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
KGRLDTAAACLILQSWLDSRA
CCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]