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The map label for this gene is 193213619

Identifier: 193213619

GI number: 193213619

Start: 2186307

End: 2186633

Strand: Direct

Name: 193213619

Synonym: Cpar_1983

Alternate gene names: NA

Gene position: 2186307-2186633 (Clockwise)

Preceding gene: 193213618

Following gene: 193213620

Centisome position: 95.5

GC content: 55.96

Gene sequence:

>327_bases
ATGTCCCGTTTTGTTTCCGCCGCCCTCGTCGGAGCTGCGCTCCTGATCTCGGGCAATGCTTTCGCTTACGATGCTGCTGC
AGGCAAAGCCACCTATGATGCAAGCTGCGCCATGTGCCACAAAACCGGCATGATGGGCGCTCCTAAAGTCGGCGATAAAG
CTGCATGGGCACCTCACATCGCCAAAGGAATGAATGTCATGGTTGCCAATTCGATCAAAGGCTACAAAGGCACCAAAGGC
ATGATGCCGGCTAAAGGCGGCAACCCGAAACTGACCGACGCTCAGGTCGGCAACGCTGTGGCCTACATGGTCGGCCAGAG
CAAATAA

Upstream 100 bases:

>100_bases
CCTTATCGAATAAATTTGGAGGTCTGCGATCAAATTGATAAAATAGGTATCGATAGATAACTATTCGCTCATATAACAAA
TCCTCAACGGAGAAAGAACT

Downstream 100 bases:

>100_bases
GCCATATCTCTGTATAGAGCAGAAAACGGGAGGCAACTCCCGTTTTTTGTTTTCAAGCGCTTGCCCCTCCGGTGAGCCGA
TTATTTTTTATCTTCATTCT

Product: cytochrome c class I

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSRFVSAALVGAALLISGNAFAYDAAAGKATYDASCAMCHKTGMMGAPKVGDKAAWAPHIAKGMNVMVANSIKGYKGTKG
MMPAKGGNPKLTDAQVGNAVAYMVGQSK

Sequences:

>Translated_108_residues
MSRFVSAALVGAALLISGNAFAYDAAAGKATYDASCAMCHKTGMMGAPKVGDKAAWAPHIAKGMNVMVANSIKGYKGTKG
MMPAKGGNPKLTDAQVGNAVAYMVGQSK
>Mature_107_residues
SRFVSAALVGAALLISGNAFAYDAAAGKATYDASCAMCHKTGMMGAPKVGDKAAWAPHIAKGMNVMVANSIKGYKGTKGM
MPAKGGNPKLTDAQVGNAVAYMVGQSK

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 10929; Mature: 10798

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
8.3 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
7.5 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVSAALVGAALLISGNAFAYDAAAGKATYDASCAMCHKTGMMGAPKVGDKAAWAPHI
CCHHHHHHHHHHHHEECCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
AKGMNVMVANSIKGYKGTKGMMPAKGGNPKLTDAQVGNAVAYMVGQSK
HCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SRFVSAALVGAALLISGNAFAYDAAAGKATYDASCAMCHKTGMMGAPKVGDKAAWAPHI
CHHHHHHHHHHHHEECCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
AKGMNVMVANSIKGYKGTKGMMPAKGGNPKLTDAQVGNAVAYMVGQSK
HCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]