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The map label for this gene is 193213618

Identifier: 193213618

GI number: 193213618

Start: 2185725

End: 2186141

Strand: Direct

Name: 193213618

Synonym: Cpar_1982

Alternate gene names: NA

Gene position: 2185725-2186141 (Clockwise)

Preceding gene: 193213617

Following gene: 193213619

Centisome position: 95.48

GC content: 58.27

Gene sequence:

>417_bases
ATGAAACGTTTTCTGCCCCTACTTACGCTCGGGTTCATCGTCCTCGGCGGCTGCGGCCTGGAAAAACCACCGGCAAAATT
AGCCGACGAGATCAAAGAAGCCCAGAATCCCAAGGAAGAAGCTGCTGCTCCGGCTGAAGAGGCTGCTGCCCCGGCTGAAG
AGCTCTCTCCCGAACTGGCTGCCGGCAAAGAGATTTATACTGCCAACTGTGCCATGTGCCACGACAGCGGCATGATGAAT
GCCCCGAAACCGGGCGACAAGACCGCCTGGGAACCCCGCCTTGCACAGGGCATGGATGCCGTCATGAAGAACACCATCGA
AGGATTCGGCGGTATGCCCGCAAAAGGCGGACATCCGGAGCTGACCGACGAACAGATCAAGAGCGCCGTGGATTACATGG
TGCACGGGGTCCAGTAA

Upstream 100 bases:

>100_bases
AACATTTTGAGCGGCGATGGATTATGATTAAAATGAAGTTTGATTTATTTTACTCGACATACCCCAAAGTCAACACCGAT
AAATTTTCAAGGAGGTCAAC

Downstream 100 bases:

>100_bases
ACGGATGCTTCCATACGTTATGTGAAGCCGGCAAGCCCGGCTTCACGCATTTTGAGCGCCAGCCCCCTTATCGAATAAAT
TTGGAGGTCTGCGATCAAAT

Product: cytochrome c class I

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKRFLPLLTLGFIVLGGCGLEKPPAKLADEIKEAQNPKEEAAAPAEEAAAPAEELSPELAAGKEIYTANCAMCHDSGMMN
APKPGDKTAWEPRLAQGMDAVMKNTIEGFGGMPAKGGHPELTDEQIKSAVDYMVHGVQ

Sequences:

>Translated_138_residues
MKRFLPLLTLGFIVLGGCGLEKPPAKLADEIKEAQNPKEEAAAPAEEAAAPAEELSPELAAGKEIYTANCAMCHDSGMMN
APKPGDKTAWEPRLAQGMDAVMKNTIEGFGGMPAKGGHPELTDEQIKSAVDYMVHGVQ
>Mature_138_residues
MKRFLPLLTLGFIVLGGCGLEKPPAKLADEIKEAQNPKEEAAAPAEEAAAPAEELSPELAAGKEIYTANCAMCHDSGMMN
APKPGDKTAWEPRLAQGMDAVMKNTIEGFGGMPAKGGHPELTDEQIKSAVDYMVHGVQ

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14591; Mature: 14591

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFLPLLTLGFIVLGGCGLEKPPAKLADEIKEAQNPKEEAAAPAEEAAAPAEELSPELA
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCCHHHCCHHHH
AGKEIYTANCAMCHDSGMMNAPKPGDKTAWEPRLAQGMDAVMKNTIEGFGGMPAKGGHPE
CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LTDEQIKSAVDYMVHGVQ
CCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRFLPLLTLGFIVLGGCGLEKPPAKLADEIKEAQNPKEEAAAPAEEAAAPAEELSPELA
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCCHHHCCHHHH
AGKEIYTANCAMCHDSGMMNAPKPGDKTAWEPRLAQGMDAVMKNTIEGFGGMPAKGGHPE
CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LTDEQIKSAVDYMVHGVQ
CCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]