| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
Click here to switch to the map view.
The map label for this gene is mpl [H]
Identifier: 193213214
GI number: 193213214
Start: 1717686
End: 1719110
Strand: Direct
Name: mpl [H]
Synonym: Cpar_1569
Alternate gene names: 193213214
Gene position: 1717686-1719110 (Clockwise)
Preceding gene: 193213212
Following gene: 193213215
Centisome position: 75.03
GC content: 60.0
Gene sequence:
>1425_bases ATGAGTTCCATCTATTTTATCGGCATCGGCGGCTCGGCAATGGCTTCGGTGGCCGTGGCGCTTTCGCACATGGGCCACGC CGTTACCGGTTCGGATACGCAGCTCTATCCTCCGATGAGCACCTATCTTGAAAATCATAACATCCGCTATTTCAACGACT TTTCTGCAGAGAACCTGAAAAGCGCATCGCCCGATCTGGTGGTGGTTGGCAATGCGATCAGCCGGGGCAATCCCGATCTT GAGTACGCGCTCGACACGCACATGGAGCTGATTTCGATGCCGGAGCTGGTGCGGCGCGAGCTGATTGGACGCCACACCTC GATTGTGGTGGCAGGCACGCACGGCAAGACAACGACCACTTCCCTCGCCGCATGGTTGCTCGAAGCGGGCGGCTTTCTGC CGGGCTTCCTCATCGGCGGCATTCCCGAGAATTTCGGCGACGGCTGCCGCCCTTCCGGCCTCTCCGAGCCGGGCTTTTTC GTGACCGAGGGCGACGAGTACGACTCGGCCTTTTTCGACAAGCGCAGCAAGTTCCTGCATTACCGCCCCGACATCGCGAT CATCAACAACGTCGAGTTCGACCACGCGGACATCTTCGACTCGCTCGACGACATCAAGAAGAGCTTCTGCCTGCTGGTGA ACCTCGTGCCGTCGAGCGGCCTCTTGATCGTCAACGGCGACGATCCGAATTCGATGGAGGTCGCCGCGAAAGCGTTCTGC CGCGTCGAGACCTTTGGCATGAACGGCACAGCGGACTGGACGGCAACCGACATCACTACCGACGCCGAAAGCACCGTCTT CACGGTCGTACACAATGGCGAAGCGATGGGCCGGGTAAGCGTGCCGCTTTTCGGCAACTACAACGTGATGAACGCGCTGG CAGCCACGGCGGCTGCAATCCGCGCGGGCGTGAGCTTTGAGTCGATCACCAAAGGGCTTGCAAAATTCAAACGCCCGAAG CGCCGCATGGAGCTGGTCGGTGAGTACGCAGGCGGCGTAACGCTCATCGAGGACTTCGCGCATCACCCGACGGCCGTACG GCTCACGCTCGGTGCGATTGCGGAACACTACCCCGGCAGGCGCATCGTGGCCTGTTTCGAGCCTCGCTCCAACACCACCA CGCGCAACATCTTTCAGCACGAGCTGACGGAGTGCTTCGACGACGCTTCGGTCGTGGTTCTCGGCAGGGTGAACCGGCCT GATCGCTACGCCCCCGAAAAACGGCTCGATGCGGCGCAGCTTTGCCACGAGCTGGAAGCAAAAGGCAAGCGTGTCTTCGC GGCTGGCGACGACGACTATCCGAACGACATCGTCCAGTTCATCAAAGCAGAACAGCAGCCCGGCGACGTGGTTGTACTGC TGAGCAACGGCAGCTTCAACGGCCTGAAAACGCTGCTGGCGGAAAGTTTTGAAAAAAAATCATGA
Upstream 100 bases:
>100_bases AAGTTCGGACAGAGTACGGTCTGTTTTGCGAGGCTGGGGTTTTTCTGTACTATTGGACTTAAGGGTATACATCACAAGCA CCTGACCAACATTCCCAACC
Downstream 100 bases:
>100_bases AGATTTCATTGGCGATAGGCTATTTTTCTATCTTGTGACTTTTCCTGGGCGGCGCATGCCCGGTTCATGCCGCTGCAACC ATCCCGAACAGAGTCATTAT
Product: UDP-N-acetylmuramate
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MSSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNDFSAENLKSASPDLVVVGNAISRGNPDL EYALDTHMELISMPELVRRELIGRHTSIVVAGTHGKTTTTSLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGLSEPGFF VTEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFCLLVNLVPSSGLLIVNGDDPNSMEVAAKAFC RVETFGMNGTADWTATDITTDAESTVFTVVHNGEAMGRVSVPLFGNYNVMNALAATAAAIRAGVSFESITKGLAKFKRPK RRMELVGEYAGGVTLIEDFAHHPTAVRLTLGAIAEHYPGRRIVACFEPRSNTTTRNIFQHELTECFDDASVVVLGRVNRP DRYAPEKRLDAAQLCHELEAKGKRVFAAGDDDYPNDIVQFIKAEQQPGDVVVLLSNGSFNGLKTLLAESFEKKS
Sequences:
>Translated_474_residues MSSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNDFSAENLKSASPDLVVVGNAISRGNPDL EYALDTHMELISMPELVRRELIGRHTSIVVAGTHGKTTTTSLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGLSEPGFF VTEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFCLLVNLVPSSGLLIVNGDDPNSMEVAAKAFC RVETFGMNGTADWTATDITTDAESTVFTVVHNGEAMGRVSVPLFGNYNVMNALAATAAAIRAGVSFESITKGLAKFKRPK RRMELVGEYAGGVTLIEDFAHHPTAVRLTLGAIAEHYPGRRIVACFEPRSNTTTRNIFQHELTECFDDASVVVLGRVNRP DRYAPEKRLDAAQLCHELEAKGKRVFAAGDDDYPNDIVQFIKAEQQPGDVVVLLSNGSFNGLKTLLAESFEKKS >Mature_473_residues SSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNDFSAENLKSASPDLVVVGNAISRGNPDLE YALDTHMELISMPELVRRELIGRHTSIVVAGTHGKTTTTSLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGLSEPGFFV TEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFCLLVNLVPSSGLLIVNGDDPNSMEVAAKAFCR VETFGMNGTADWTATDITTDAESTVFTVVHNGEAMGRVSVPLFGNYNVMNALAATAAAIRAGVSFESITKGLAKFKRPKR RMELVGEYAGGVTLIEDFAHHPTAVRLTLGAIAEHYPGRRIVACFEPRSNTTTRNIFQHELTECFDDASVVVLGRVNRPD RYAPEKRLDAAQLCHELEAKGKRVFAAGDDDYPNDIVQFIKAEQQPGDVVVLLSNGSFNGLKTLLAESFEKKS
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=472, Percent_Identity=40.8898305084746, Blast_Score=325, Evalue=3e-90, Organism=Escherichia coli, GI1786279, Length=430, Percent_Identity=30, Blast_Score=144, Evalue=9e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 51548; Mature: 51417
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNDFSAENLK CCEEEEEEECHHHHHHHHHHHHHCCCEECCCCCEECCCHHHHHCCCCEEEEECCCCHHHC SASPDLVVVGNAISRGNPDLEYALDTHMELISMPELVRRELIGRHTSIVVAGTHGKTTTT CCCCCEEEEECHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCHHH SLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGLSEPGFFVTEGDEYDSAFFDKRSKFLH HHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEE YRPDIAIINNVEFDHADIFDSLDDIKKSFCLLVNLVPSSGLLIVNGDDPNSMEVAAKAFC ECCCEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCHHHHHHHHHH RVETFGMNGTADWTATDITTDAESTVFTVVHNGEAMGRVSVPLFGNYNVMNALAATAAAI EEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEECEEECCCHHHHHHHHHHHHH RAGVSFESITKGLAKFKRPKRRMELVGEYAGGVTLIEDFAHHPTAVRLTLGAIAEHYPGR HHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEHHHHHHHCCCC RIVACFEPRSNTTTRNIFQHELTECFDDASVVVLGRVNRPDRYAPEKRLDAAQLCHELEA EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCCHHHHHHHHHH KGKRVFAAGDDDYPNDIVQFIKAEQQPGDVVVLLSNGSFNGLKTLLAESFEKKS CCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCC >Mature Secondary Structure SSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNDFSAENLK CEEEEEEECHHHHHHHHHHHHHCCCEECCCCCEECCCHHHHHCCCCEEEEECCCCHHHC SASPDLVVVGNAISRGNPDLEYALDTHMELISMPELVRRELIGRHTSIVVAGTHGKTTTT CCCCCEEEEECHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCHHH SLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGLSEPGFFVTEGDEYDSAFFDKRSKFLH HHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEE YRPDIAIINNVEFDHADIFDSLDDIKKSFCLLVNLVPSSGLLIVNGDDPNSMEVAAKAFC ECCCEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCHHHHHHHHHH RVETFGMNGTADWTATDITTDAESTVFTVVHNGEAMGRVSVPLFGNYNVMNALAATAAAI EEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEECEEECCCHHHHHHHHHHHHH RAGVSFESITKGLAKFKRPKRRMELVGEYAGGVTLIEDFAHHPTAVRLTLGAIAEHYPGR HHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEHHHHHHHCCCC RIVACFEPRSNTTTRNIFQHELTECFDDASVVVLGRVNRPDRYAPEKRLDAAQLCHELEA EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCCHHHHHHHHHH KGKRVFAAGDDDYPNDIVQFIKAEQQPGDVVVLLSNGSFNGLKTLLAESFEKKS CCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]