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The map label for this gene is blc [H]

Identifier: 193212655

GI number: 193212655

Start: 1104597

End: 1105082

Strand: Direct

Name: blc [H]

Synonym: Cpar_1000

Alternate gene names: 193212655

Gene position: 1104597-1105082 (Clockwise)

Preceding gene: 193212652

Following gene: 193212656

Centisome position: 48.25

GC content: 58.44

Gene sequence:

>486_bases
ATGTTCGGAAATCTTTTACGCAAACGGTTGCATCGCGGCGGGCCAGCCACGGTTCCGGAAGTCGATGTCATGAAATACTG
CGGCACGTGGTATGAAATCGCCTCGATACCGAGCAAGCAGCAGCGCGGCTGCGCCAGCACGAAAGCCGAGTACACGCTCG
ACGCCGCCAAAGGCATGGTGCTGGTACGCAACTCGTGCAAGCGGAACGGCCGGGAAAAATCCATCCGTGCGACCGCCGTG
CCCGTAGACGGTAGCGGCAACGCCAAGTTGATCGTCACCTTTTTCAGATGGATCAAAGCTGATTACTGGGTCATCGGGCT
GGCCGACGACTACTCGTGGGCGCTGGTGTCGAATCCTTCCAGAACGCGCTGCTGGGTGCTGTCCAGAACGCCGTACATGG
ATGATGCCACCTACGCAGAGCTGCTCGAGCAGTTGCGCCTGAAGGGAATCGATACAGCTCAGATGGTGAAGACCGCTCAG
GGATAA

Upstream 100 bases:

>100_bases
GCAATTGTTTCGCAGTGTTACGATTATGGTGAAACTTTGGCGTTACCGCTTTTCGTTTATAAAAGTATGTCATCAGAAAA
CGGTAAAACTTCATTCTATC

Downstream 100 bases:

>100_bases
AGCTTCCTGCTTGACGGTTCCTGAGTTGTTGTGTTTGGAACAAAGGGGAAATTCGGGCATATTTTGCGGCAAAGCAATCA
GTAATCCCGATTTTCCCCGA

Product: Lipocalin family protein

Products: NA

Alternate protein names: Protein vlp [H]

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MFGNLLRKRLHRGGPATVPEVDVMKYCGTWYEIASIPSKQQRGCASTKAEYTLDAAKGMVLVRNSCKRNGREKSIRATAV
PVDGSGNAKLIVTFFRWIKADYWVIGLADDYSWALVSNPSRTRCWVLSRTPYMDDATYAELLEQLRLKGIDTAQMVKTAQ
G

Sequences:

>Translated_161_residues
MFGNLLRKRLHRGGPATVPEVDVMKYCGTWYEIASIPSKQQRGCASTKAEYTLDAAKGMVLVRNSCKRNGREKSIRATAV
PVDGSGNAKLIVTFFRWIKADYWVIGLADDYSWALVSNPSRTRCWVLSRTPYMDDATYAELLEQLRLKGIDTAQMVKTAQ
G
>Mature_161_residues
MFGNLLRKRLHRGGPATVPEVDVMKYCGTWYEIASIPSKQQRGCASTKAEYTLDAAKGMVLVRNSCKRNGREKSIRATAV
PVDGSGNAKLIVTFFRWIKADYWVIGLADDYSWALVSNPSRTRCWVLSRTPYMDDATYAELLEQLRLKGIDTAQMVKTAQ
G

Specific function: Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids [H]

COG id: COG3040

COG function: function code M; Bacterial lipocalin

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. Lipocalin family [H]

Homologues:

Organism=Escherichia coli, GI1790592, Length=148, Percent_Identity=31.7567567567568, Blast_Score=73, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR013208
- InterPro:   IPR022271
- InterPro:   IPR002446
- InterPro:   IPR022272 [H]

Pfam domain/function: PF08212 Lipocalin_2 [H]

EC number: NA

Molecular weight: Translated: 18041; Mature: 18041

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGNLLRKRLHRGGPATVPEVDVMKYCGTWYEIASIPSKQQRGCASTKAEYTLDAAKGMV
CCHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCEEEHHHCCEE
LVRNSCKRNGREKSIRATAVPVDGSGNAKLIVTFFRWIKADYWVIGLADDYSWALVSNPS
EEEHHHHCCCCCCCEEEEEEEECCCCCCEEHHHHHHHHCCCEEEEEECCCCCEEEECCCC
RTRCWVLSRTPYMDDATYAELLEQLRLKGIDTAQMVKTAQG
CCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MFGNLLRKRLHRGGPATVPEVDVMKYCGTWYEIASIPSKQQRGCASTKAEYTLDAAKGMV
CCHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCEEEHHHCCEE
LVRNSCKRNGREKSIRATAVPVDGSGNAKLIVTFFRWIKADYWVIGLADDYSWALVSNPS
EEEHHHHCCCCCCCEEEEEEEECCCCCCEEHHHHHHHHCCCEEEEEECCCCCEEEECCCC
RTRCWVLSRTPYMDDATYAELLEQLRLKGIDTAQMVKTAQG
CCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8514410; 10952301 [H]