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The map label for this gene is 193212656

Identifier: 193212656

GI number: 193212656

Start: 1105182

End: 1105850

Strand: Direct

Name: 193212656

Synonym: Cpar_1001

Alternate gene names: NA

Gene position: 1105182-1105850 (Clockwise)

Preceding gene: 193212655

Following gene: 193212658

Centisome position: 48.28

GC content: 56.05

Gene sequence:

>669_bases
ATGCAGGCATTCTGGCTCTCTTTCGCGATGATTTTTCTGGCCGAGCTTGGCGATAAAAGCCAGCTTCTGGCCCTTGCTTT
GGCGACCTGCTACAGTCCGCGTACGGTGCTGTGGGGAATTTTCTGGTCGACGCTTGCCGTGCACGTCTTTTCGACGGGTA
TCGGCTGGCTGATGGGAGATTTGCTGCCGACCGATCTTATCACTTTTGCTGCTGGAGTGTCGTTTGTCATCTTCGGCTTC
TGGACGCTTCGCGGCGACAGCCTCGACAACGATGATGAGGCGGGGGAGTGCAAAACCGGCGTCAATCCTTTCTGGCTGGT
TTTCTCGACCTTTTTCATGGCTGAACTTGGCGACAAGACCATGCTCTCCACAATCAGCCTCGCCACCACGAATCCATTTA
TTCCGGTCTGGATAGGCTCAACCCTGGGCATGGTGGTGTCGGATGGCCTGGCGGTCATGGTCGGCAGGATGATGGGCAGG
AACCTGCCGGAAAAGGTCGTGACCACGGGAGCCGCTATCGTTTTTTTCCTGTTCGGCGTTTACTGGATGTACCTCGGCGG
CGTCATGCTCTCCCTGATGATCTGGGGAATTGCGCTACTCGTGCTGGTTGTTGCCGCACTCTTCTTTTTCCGTGATCTGA
TCTGGAAGCAGCGCGGCAACGAAGCCTGA

Upstream 100 bases:

>100_bases
AAGCTTCCTGCTTGACGGTTCCTGAGTTGTTGTGTTTGGAACAAAGGGGAAATTCGGGCATATTTTGCGGCAAAGCAATC
AGTAATCCCGATTTTCCCCG

Downstream 100 bases:

>100_bases
ACGGTGAGCAGATTTACGATGCGTCCGCAGTTTCGTATGCCGGCAGAAAAAGCGTTCCACCGCCCTCGGTCTGATCGAGC
GTGACCTGCCAGAAGGGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQAFWLSFAMIFLAELGDKSQLLALALATCYSPRTVLWGIFWSTLAVHVFSTGIGWLMGDLLPTDLITFAAGVSFVIFGF
WTLRGDSLDNDDEAGECKTGVNPFWLVFSTFFMAELGDKTMLSTISLATTNPFIPVWIGSTLGMVVSDGLAVMVGRMMGR
NLPEKVVTTGAAIVFFLFGVYWMYLGGVMLSLMIWGIALLVLVVAALFFFRDLIWKQRGNEA

Sequences:

>Translated_222_residues
MQAFWLSFAMIFLAELGDKSQLLALALATCYSPRTVLWGIFWSTLAVHVFSTGIGWLMGDLLPTDLITFAAGVSFVIFGF
WTLRGDSLDNDDEAGECKTGVNPFWLVFSTFFMAELGDKTMLSTISLATTNPFIPVWIGSTLGMVVSDGLAVMVGRMMGR
NLPEKVVTTGAAIVFFLFGVYWMYLGGVMLSLMIWGIALLVLVVAALFFFRDLIWKQRGNEA
>Mature_222_residues
MQAFWLSFAMIFLAELGDKSQLLALALATCYSPRTVLWGIFWSTLAVHVFSTGIGWLMGDLLPTDLITFAAGVSFVIFGF
WTLRGDSLDNDDEAGECKTGVNPFWLVFSTFFMAELGDKTMLSTISLATTNPFIPVWIGSTLGMVVSDGLAVMVGRMMGR
NLPEKVVTTGAAIVFFLFGVYWMYLGGVMLSLMIWGIALLVLVVAALFFFRDLIWKQRGNEA

Specific function: Unknown

COG id: COG2119

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0016 (TC 9.B.26) family [H]

Homologues:

Organism=Drosophila melanogaster, GI281361794, Length=222, Percent_Identity=28.8288288288288, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647003, Length=222, Percent_Identity=28.8288288288288, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357589, Length=222, Percent_Identity=28.8288288288288, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001727 [H]

Pfam domain/function: PF01169 UPF0016 [H]

EC number: NA

Molecular weight: Translated: 24476; Mature: 24476

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAFWLSFAMIFLAELGDKSQLLALALATCYSPRTVLWGIFWSTLAVHVFSTGIGWLMGD
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPTDLITFAAGVSFVIFGFWTLRGDSLDNDDEAGECKTGVNPFWLVFSTFFMAELGDKT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHH
MLSTISLATTNPFIPVWIGSTLGMVVSDGLAVMVGRMMGRNLPEKVVTTGAAIVFFLFGV
HHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YWMYLGGVMLSLMIWGIALLVLVVAALFFFRDLIWKQRGNEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQAFWLSFAMIFLAELGDKSQLLALALATCYSPRTVLWGIFWSTLAVHVFSTGIGWLMGD
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPTDLITFAAGVSFVIFGFWTLRGDSLDNDDEAGECKTGVNPFWLVFSTFFMAELGDKT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHH
MLSTISLATTNPFIPVWIGSTLGMVVSDGLAVMVGRMMGRNLPEKVVTTGAAIVFFLFGV
HHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YWMYLGGVMLSLMIWGIALLVLVVAALFFFRDLIWKQRGNEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]