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The map label for this gene is pds [H]

Identifier: 193212499

GI number: 193212499

Start: 908277

End: 909662

Strand: Direct

Name: pds [H]

Synonym: Cpar_0836

Alternate gene names: 193212499

Gene position: 908277-909662 (Clockwise)

Preceding gene: 193212498

Following gene: 193212500

Centisome position: 39.68

GC content: 56.35

Gene sequence:

>1386_bases
ATGAACGGAAAGAATAAAAAGGTACTGATTCTCGGCGGAGGTCTTGCCGGCCTGACCGCGGCAAAGCGACTCGTTGACCG
CGGATTTGAGGTCAAGGTGCTTGAGAAGCGCTCCATTTACGGTGGCAAGGTTTCAGCCTGGAAAGATGACGAGGGTGACT
GGATTGAATCCGGCACCCACTGTTTTTTCGGTGCCTACAACGTGCTCTACGATCTCATGAAAGAGATCAAAACGTACCAC
GCCGTCGACTGGAAGCAGCACCAGCTTACCTACACGCTTGAAGGGGGCAACAACTTCACGTTCAACACCTGGGATCTGCC
CAGCCCGCTGCACCTTTTGCCGGCGATCATCAAGAATGGCTATTTCACTTTCGGCGAAATGGCTTCGTTCTCCAAATCGC
TCATTCCGCTGGCGTTGCAGAAAGCCAACTATCCGCCGACGCAGGATCATGTGACCTTTGCGCAGTGGGCCGAAGAGAAG
AAGTTCGGCAAGCGTCTGATGGACAAGATGTTCCGTCCGATGGCGCTCGCACTCAAGTTCATTCCGCCGGAGGAGATTTC
AGCCAAGATCATTCTCGACGTTACCGAGACCTTCTACCGCATCCCGGATTCTTCCTGCATGGGCTTTCTGAAAGGCTCCC
CGCAGGAGTACCTCCATGATCCGTTGGTGGCGCACTCGCGCAACAAGGGCGCGGTGTTCCAGAGCCAGTCACCGGTGGAC
GAACTGCTCTTCGACGGTAAACAGATTCGCGGTGTGCAGTTGCGCAACGGCGAGATTCTCGATGCTGATTACTACCTGAC
TGCGTTGCCAATTCACGATCTGTGCAAGGTGTTGCCGTCGTCGCTCAAGCAGCACGACCGCTTTTTCGGTAATCTCGACA
AACTCGAAGGAGTACCGGTCATTTCGGCGCAGATCTGGTACGACCGTGAGATCTCTTCGATCGATAACGTCCTTTTCAGC
CCTGATGGCATCATTCCGGTGTACGCCAACCTGGCTCGTACCACGCCCGATTACCGCACCCTGCGCGGCGAGCGCTTCGA
GGGCAAGACGCGCTTCGAGTTCTGCGTTGCGCCTGCCAGGGAGCTGATGGGGCTGAACAAAGAGGAGATCATCGACAGGG
TTGACCGCAGTGTGCGCGCCAACTTCCCGAAAGAGACGCAGGGCGCCAAAATTCTGAAATCCACACTGGTCAAGATTCCG
CATTCGGTTTATGCGCCGCTGCCGGGCATGGAGGTCTATCGCCCGACGCAGAAAACGCCGGTGAGCAACCTGTTCATTTC
CGGCGGCTACTCGCAGCAGCTCTACTACGATTCCATGGGCGGCGCAGTCATGAGCGCTAACCTGGCCGTCGATGCGCTCA
TGAAGGCGGCCGGTGAAAATGGGTGA

Upstream 100 bases:

>100_bases
CATCGACGAAGCGACCCTTTCGCGGGCGATGGATGGGCGGTCGGCCGTCTGAGAATCTCGATGGCTACTTAAAGAAAAAG
CTATTCAGTTAATTTGAGTG

Downstream 100 bases:

>100_bases
CAGGTGACGAGCTGGAAAACTTTTCGACGGAATGGAAAAGTTGTTCTTTTTCTCATCTAAATTATTATCTTTGCTGACCT
GATTGAATGACCCAAAAGGT

Product: carotene 7,8-desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MNGKNKKVLILGGGLAGLTAAKRLVDRGFEVKVLEKRSIYGGKVSAWKDDEGDWIESGTHCFFGAYNVLYDLMKEIKTYH
AVDWKQHQLTYTLEGGNNFTFNTWDLPSPLHLLPAIIKNGYFTFGEMASFSKSLIPLALQKANYPPTQDHVTFAQWAEEK
KFGKRLMDKMFRPMALALKFIPPEEISAKIILDVTETFYRIPDSSCMGFLKGSPQEYLHDPLVAHSRNKGAVFQSQSPVD
ELLFDGKQIRGVQLRNGEILDADYYLTALPIHDLCKVLPSSLKQHDRFFGNLDKLEGVPVISAQIWYDREISSIDNVLFS
PDGIIPVYANLARTTPDYRTLRGERFEGKTRFEFCVAPARELMGLNKEEIIDRVDRSVRANFPKETQGAKILKSTLVKIP
HSVYAPLPGMEVYRPTQKTPVSNLFISGGYSQQLYYDSMGGAVMSANLAVDALMKAAGENG

Sequences:

>Translated_461_residues
MNGKNKKVLILGGGLAGLTAAKRLVDRGFEVKVLEKRSIYGGKVSAWKDDEGDWIESGTHCFFGAYNVLYDLMKEIKTYH
AVDWKQHQLTYTLEGGNNFTFNTWDLPSPLHLLPAIIKNGYFTFGEMASFSKSLIPLALQKANYPPTQDHVTFAQWAEEK
KFGKRLMDKMFRPMALALKFIPPEEISAKIILDVTETFYRIPDSSCMGFLKGSPQEYLHDPLVAHSRNKGAVFQSQSPVD
ELLFDGKQIRGVQLRNGEILDADYYLTALPIHDLCKVLPSSLKQHDRFFGNLDKLEGVPVISAQIWYDREISSIDNVLFS
PDGIIPVYANLARTTPDYRTLRGERFEGKTRFEFCVAPARELMGLNKEEIIDRVDRSVRANFPKETQGAKILKSTLVKIP
HSVYAPLPGMEVYRPTQKTPVSNLFISGGYSQQLYYDSMGGAVMSANLAVDALMKAAGENG
>Mature_461_residues
MNGKNKKVLILGGGLAGLTAAKRLVDRGFEVKVLEKRSIYGGKVSAWKDDEGDWIESGTHCFFGAYNVLYDLMKEIKTYH
AVDWKQHQLTYTLEGGNNFTFNTWDLPSPLHLLPAIIKNGYFTFGEMASFSKSLIPLALQKANYPPTQDHVTFAQWAEEK
KFGKRLMDKMFRPMALALKFIPPEEISAKIILDVTETFYRIPDSSCMGFLKGSPQEYLHDPLVAHSRNKGAVFQSQSPVD
ELLFDGKQIRGVQLRNGEILDADYYLTALPIHDLCKVLPSSLKQHDRFFGNLDKLEGVPVISAQIWYDREISSIDNVLFS
PDGIIPVYANLARTTPDYRTLRGERFEGKTRFEFCVAPARELMGLNKEEIIDRVDRSVRANFPKETQGAKILKSTLVKIP
HSVYAPLPGMEVYRPTQKTPVSNLFISGGYSQQLYYDSMGGAVMSANLAVDALMKAAGENG

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001613
- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 51756; Mature: 51756

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKNKKVLILGGGLAGLTAAKRLVDRGFEVKVLEKRSIYGGKVSAWKDDEGDWIESGTH
CCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCE
CFFGAYNVLYDLMKEIKTYHAVDWKQHQLTYTLEGGNNFTFNTWDLPSPLHLLPAIIKNG
EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHCC
YFTFGEMASFSKSLIPLALQKANYPPTQDHVTFAQWAEEKKFGKRLMDKMFRPMALALKF
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPPEEISAKIILDVTETFYRIPDSSCMGFLKGSPQEYLHDPLVAHSRNKGAVFQSQSPVD
CCCHHCCEEEEEEEHHHHHHCCCHHHHHHHCCCCHHHHCCCHHHCCCCCCCEECCCCCHH
ELLFDGKQIRGVQLRNGEILDADYYLTALPIHDLCKVLPSSLKQHDRFFGNLDKLEGVPV
HHHHCCCCCCEEEECCCEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCE
ISAQIWYDREISSIDNVLFSPDGIIPVYANLARTTPDYRTLRGERFEGKTRFEFCVAPAR
EEEEEEECCHHHHHHHHEECCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHH
ELMGLNKEEIIDRVDRSVRANFPKETQGAKILKSTLVKIPHSVYAPLPGMEVYRPTQKTP
HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEECCCCCCC
VSNLFISGGYSQQLYYDSMGGAVMSANLAVDALMKAAGENG
CCCEEEECCCCCEEEEECCCCCEEEHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNGKNKKVLILGGGLAGLTAAKRLVDRGFEVKVLEKRSIYGGKVSAWKDDEGDWIESGTH
CCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCE
CFFGAYNVLYDLMKEIKTYHAVDWKQHQLTYTLEGGNNFTFNTWDLPSPLHLLPAIIKNG
EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHCC
YFTFGEMASFSKSLIPLALQKANYPPTQDHVTFAQWAEEKKFGKRLMDKMFRPMALALKF
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPPEEISAKIILDVTETFYRIPDSSCMGFLKGSPQEYLHDPLVAHSRNKGAVFQSQSPVD
CCCHHCCEEEEEEEHHHHHHCCCHHHHHHHCCCCHHHHCCCHHHCCCCCCCEECCCCCHH
ELLFDGKQIRGVQLRNGEILDADYYLTALPIHDLCKVLPSSLKQHDRFFGNLDKLEGVPV
HHHHCCCCCCEEEECCCEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCE
ISAQIWYDREISSIDNVLFSPDGIIPVYANLARTTPDYRTLRGERFEGKTRFEFCVAPAR
EEEEEEECCHHHHHHHHEECCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHH
ELMGLNKEEIIDRVDRSVRANFPKETQGAKILKSTLVKIPHSVYAPLPGMEVYRPTQKTP
HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEECCCCCCC
VSNLFISGGYSQQLYYDSMGGAVMSANLAVDALMKAAGENG
CCCEEEECCCCCEEEEECCCCCEEEHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1581575; 8905231 [H]