Click here to switch to the map view.

The map label for this gene is 193212385

Identifier: 193212385

GI number: 193212385

Start: 768880

End: 770388

Strand: Direct

Name: 193212385

Synonym: Cpar_0719

Alternate gene names: NA

Gene position: 768880-770388 (Clockwise)

Preceding gene: 193212384

Following gene: 193212386

Centisome position: 33.59

GC content: 44.4

Gene sequence:

>1509_bases
ATGAACGTTCTGCTCATCTATCCTGAATTTCCAGATACGTTCTGGAGCTTTAAGCATGCGCTGAAATTTGTCGGCAAGAA
AGCTGCTTTACCACCTCTTGGATTGCTAACCATAGCGTCGATGCTTCCTGAACAGTGGGGCCGAAAGCTTCTTGATCTCA
ATGTAAGTCCGCTTAAAGCAAAAGATCTTTTATGGGCTGATATGGTTTTTATCAGCGCAATGGCTGTTCAGCAGAAGTCT
GCAAAGGAAGTGATTGAGCGATGCCATAATGTCGGCATAAAACTGGTTGCTGGTGGCCCATTGTTTACTGCCGGGTATGA
ACAATATCCGGATGTCGATCATTTCGTGTTAAATGAGGCAGAACTGACCTTTCCTCCTTTCCTTGAAGATATGAAACAAG
GGTTGCCTGACAGAATCTATACCACGGATAAGTTTGCTGATATAACGAGCACACCGGCACCAGAGTGGCAACTGCTTGAC
ATGGAAAAATATGCATCTATGGCCATACAGTTTTCAAGAGGATGTCCTTACCAGTGTGATTTTTGTAATATCACCGCCCT
CCTGGGCCATAAAATACGCACCAAAACAAGCGCTCAAATTATCAGAGAGCTTGACGCTCTTCGTAAGCTTGGATGGAAAG
GTACTGTTTTTTTTGTTGACGATAATTTCATTGCCAATAAATCGTATCTGAAAAAAGAGCTGCTTCCGCAACTGATCGCC
TGGCGAAAGGCGAACTCACTGACAAATCAGTACTATACCGAATGTTCCATAAATCTGGCTGATGATCCGGAACTCATGGA
TCTCATGGTGCAGGCAGGCTTTAACCAGGTCTTTATTGGCATTGAAACACCTGATGATTCTGCCTTGAAGGCGTGTGGAA
AACAGCACAATACTTCGAGAAATCTTCTTGACAACATCAGGCTGATTCAGCATGCCGGTCTGGAGGTCATGGGTGGGTTT
ATCGTCGGTTTTGACAGCGATACCCCTTCGATTTTTTCAAAACAAATCGAATTTATTCAGCAAAGCGGTATTGTGACTGC
CATGGTAGGTATTCTGCAGGCATTGCCAGGTACGAAATTGTATGAACGGATGAAGCTCGAAGGCCGGCTGTTGAACAATT
CAAGCGGCGACAATGCTGATGGCAATACCAATATCATACCCAAAATGGATTCCGAGCTTCTGCGAAAAGGCTATATGAAG
ATGATGCTCTATCTCTATGCGCCAAAGAACTACTACCAACGCATACGGACATTGATTAAGGAATACAAGGTACCGGAAAT
AAAAAACCGTATCAGGATATCCCAGTTTATGGCTTTTGTGCGTTCGGTAGTACTGCTTGGTGTTGTTGGAAAGGAGCGCG
TTCAGTACTGGAGTATGTTGATCTGGACCATTGTACATCACCGCCGTGCACTGCCTCTTGCAATAACGCTGGCTATTTAC
GGTAATCATTTTCGCAAAGTTTCGCAGTTGTATATCAGGAAGGAAGATTCGCTGGTGAATCCGGTTTGA

Upstream 100 bases:

>100_bases
GCTGGTCAACGTCATGTTAAGCGGTTATTATAAAATTGTTTAGGTTATTGTGGCTTATAGTCATGACGCGTTACTTTTCT
GAAGATAAAAGTCTACTTCG

Downstream 100 bases:

>100_bases
TAATACACGGTAGTCATAATCACTCATTCGATAGACGGTGAACTCAGGATTTTCATTATCACGATCCATTGGATCATCAG
GTCTCTTGTTAACTGGTCGT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: ORF N [H]

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MNVLLIYPEFPDTFWSFKHALKFVGKKAALPPLGLLTIASMLPEQWGRKLLDLNVSPLKAKDLLWADMVFISAMAVQQKS
AKEVIERCHNVGIKLVAGGPLFTAGYEQYPDVDHFVLNEAELTFPPFLEDMKQGLPDRIYTTDKFADITSTPAPEWQLLD
MEKYASMAIQFSRGCPYQCDFCNITALLGHKIRTKTSAQIIRELDALRKLGWKGTVFFVDDNFIANKSYLKKELLPQLIA
WRKANSLTNQYYTECSINLADDPELMDLMVQAGFNQVFIGIETPDDSALKACGKQHNTSRNLLDNIRLIQHAGLEVMGGF
IVGFDSDTPSIFSKQIEFIQQSGIVTAMVGILQALPGTKLYERMKLEGRLLNNSSGDNADGNTNIIPKMDSELLRKGYMK
MMLYLYAPKNYYQRIRTLIKEYKVPEIKNRIRISQFMAFVRSVVLLGVVGKERVQYWSMLIWTIVHHRRALPLAITLAIY
GNHFRKVSQLYIRKEDSLVNPV

Sequences:

>Translated_502_residues
MNVLLIYPEFPDTFWSFKHALKFVGKKAALPPLGLLTIASMLPEQWGRKLLDLNVSPLKAKDLLWADMVFISAMAVQQKS
AKEVIERCHNVGIKLVAGGPLFTAGYEQYPDVDHFVLNEAELTFPPFLEDMKQGLPDRIYTTDKFADITSTPAPEWQLLD
MEKYASMAIQFSRGCPYQCDFCNITALLGHKIRTKTSAQIIRELDALRKLGWKGTVFFVDDNFIANKSYLKKELLPQLIA
WRKANSLTNQYYTECSINLADDPELMDLMVQAGFNQVFIGIETPDDSALKACGKQHNTSRNLLDNIRLIQHAGLEVMGGF
IVGFDSDTPSIFSKQIEFIQQSGIVTAMVGILQALPGTKLYERMKLEGRLLNNSSGDNADGNTNIIPKMDSELLRKGYMK
MMLYLYAPKNYYQRIRTLIKEYKVPEIKNRIRISQFMAFVRSVVLLGVVGKERVQYWSMLIWTIVHHRRALPLAITLAIY
GNHFRKVSQLYIRKEDSLVNPV
>Mature_502_residues
MNVLLIYPEFPDTFWSFKHALKFVGKKAALPPLGLLTIASMLPEQWGRKLLDLNVSPLKAKDLLWADMVFISAMAVQQKS
AKEVIERCHNVGIKLVAGGPLFTAGYEQYPDVDHFVLNEAELTFPPFLEDMKQGLPDRIYTTDKFADITSTPAPEWQLLD
MEKYASMAIQFSRGCPYQCDFCNITALLGHKIRTKTSAQIIRELDALRKLGWKGTVFFVDDNFIANKSYLKKELLPQLIA
WRKANSLTNQYYTECSINLADDPELMDLMVQAGFNQVFIGIETPDDSALKACGKQHNTSRNLLDNIRLIQHAGLEVMGGF
IVGFDSDTPSIFSKQIEFIQQSGIVTAMVGILQALPGTKLYERMKLEGRLLNNSSGDNADGNTNIIPKMDSELLRKGYMK
MMLYLYAPKNYYQRIRTLIKEYKVPEIKNRIRISQFMAFVRSVVLLGVVGKERVQYWSMLIWTIVHHRRALPLAITLAIY
GNHFRKVSQLYIRKEDSLVNPV

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 57140; Mature: 57140

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLLIYPEFPDTFWSFKHALKFVGKKAALPPLGLLTIASMLPEQWGRKLLDLNVSPLKA
CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCH
KDLLWADMVFISAMAVQQKSAKEVIERCHNVGIKLVAGGPLFTAGYEQYPDVDHFVLNEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCHHEEECCC
ELTFPPFLEDMKQGLPDRIYTTDKFADITSTPAPEWQLLDMEKYASMAIQFSRGCPYQCD
CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCC
FCNITALLGHKIRTKTSAQIIRELDALRKLGWKGTVFFVDDNFIANKSYLKKELLPQLIA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCHHHHHHHHHHHHHH
WRKANSLTNQYYTECSINLADDPELMDLMVQAGFNQVFIGIETPDDSALKACGKQHNTSR
HHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCHH
NLLDNIRLIQHAGLEVMGGFIVGFDSDTPSIFSKQIEFIQQSGIVTAMVGILQALPGTKL
HHHHHHHHHHHCCHHEECCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
YERMKLEGRLLNNSSGDNADGNTNIIPKMDSELLRKGYMKMMLYLYAPKNYYQRIRTLIK
HHHHHHCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EYKVPEIKNRIRISQFMAFVRSVVLLGVVGKERVQYWSMLIWTIVHHRRALPLAITLAIY
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
GNHFRKVSQLYIRKEDSLVNPV
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNVLLIYPEFPDTFWSFKHALKFVGKKAALPPLGLLTIASMLPEQWGRKLLDLNVSPLKA
CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCH
KDLLWADMVFISAMAVQQKSAKEVIERCHNVGIKLVAGGPLFTAGYEQYPDVDHFVLNEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCHHEEECCC
ELTFPPFLEDMKQGLPDRIYTTDKFADITSTPAPEWQLLDMEKYASMAIQFSRGCPYQCD
CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCC
FCNITALLGHKIRTKTSAQIIRELDALRKLGWKGTVFFVDDNFIANKSYLKKELLPQLIA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCHHHHHHHHHHHHHH
WRKANSLTNQYYTECSINLADDPELMDLMVQAGFNQVFIGIETPDDSALKACGKQHNTSR
HHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCHH
NLLDNIRLIQHAGLEVMGGFIVGFDSDTPSIFSKQIEFIQQSGIVTAMVGILQALPGTKL
HHHHHHHHHHHCCHHEECCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
YERMKLEGRLLNNSSGDNADGNTNIIPKMDSELLRKGYMKMMLYLYAPKNYYQRIRTLIK
HHHHHHCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EYKVPEIKNRIRISQFMAFVRSVVLLGVVGKERVQYWSMLIWTIVHHRRALPLAITLAIY
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
GNHFRKVSQLYIRKEDSLVNPV
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231; 8467083 [H]