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The map label for this gene is ybgF [H]

Identifier: 193212310

GI number: 193212310

Start: 688076

End: 688867

Strand: Direct

Name: ybgF [H]

Synonym: Cpar_0643

Alternate gene names: 193212310

Gene position: 688076-688867 (Clockwise)

Preceding gene: 193212309

Following gene: 193212317

Centisome position: 30.06

GC content: 48.61

Gene sequence:

>792_bases
ATGATGAAAAAACGATCTTTTTTGTTTTTGCCGTTTGTGCTCCTCTCGGCATGTGCGTCACAGAATGATCTGAGCTATGT
GCAGGGACAGGTTTCCCAATTGAAGCAGGAGTCCCAGACGATCAAACAGCAATCGGCGGGCTCTTACTCGGAAATGACCC
AATATCGAGAGGACATTGCGCGGCTTCGCGGCTCGATCAACGAGTTGCAGTACAACTATCAGAGCGCGATGAAGCGGCTT
GATATGGAAGACTCTCTGCAGGTCAGTAAGACCAATGAGCTTGAAAACAGAATTGCAAGGATAGAGAAATATATCGGGCT
TGCTTCACCAGAGGGGCAATCGAATACTCCACTACCACCTGTAGTTAAAGCGCCTGTTCAGCCCGGAGTGCCTGTATCCA
AACCTTCCGCATCTGAAGCTTCTATGAGCGAGAATTTGCTCAGTGAAGGTCTTCTCCTGATGGAGAAAAAGGATTATAAC
AGCGCACGTGAGCGTTTCAAGGAGTTCATGTCAAAGAACCCCAATTCTCCGAAAGTTTCCGATGCGCAGTTCTACCTCGC
TGAAAGCTATTATGAAGAGCAGTGGTATGAAAAGGCCATTCTTGAATACCAGGTTGTGATCGCCAAATACACCAAAAGCG
CTAAACGGCCCGCTGCGCTGTACAAGCAGGGGCTTGCGTTCGAGCAGATCGGGGATAAGGCCAATGCCAAGGCTCGTTAC
AGGGATGTGGTAAATCTTTATTCCAAAACTCCGGAAGCCCGGCTCGCCAAAAAGAAGATGGACGCAAATTAG

Upstream 100 bases:

>100_bases
TTCATTACGAAATAACCGTCTCATCGAATCTTCTTACCGGAGACCGGGCATTGCCCGGTGCCCCGGTATTTACTTTTATA
GATGAACCAATGTTGGATCT

Downstream 100 bases:

>100_bases
TGCACACGATAGGTGCTGAGTAATCAAGCCGTGCAGAAATCGCCATCCAAACGTACTGACTCAGAAGTTTGGATGGCGAT
TTCACTTTTATACGAAAACA

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MMKKRSFLFLPFVLLSACASQNDLSYVQGQVSQLKQESQTIKQQSAGSYSEMTQYREDIARLRGSINELQYNYQSAMKRL
DMEDSLQVSKTNELENRIARIEKYIGLASPEGQSNTPLPPVVKAPVQPGVPVSKPSASEASMSENLLSEGLLLMEKKDYN
SARERFKEFMSKNPNSPKVSDAQFYLAESYYEEQWYEKAILEYQVVIAKYTKSAKRPAALYKQGLAFEQIGDKANAKARY
RDVVNLYSKTPEARLAKKKMDAN

Sequences:

>Translated_263_residues
MMKKRSFLFLPFVLLSACASQNDLSYVQGQVSQLKQESQTIKQQSAGSYSEMTQYREDIARLRGSINELQYNYQSAMKRL
DMEDSLQVSKTNELENRIARIEKYIGLASPEGQSNTPLPPVVKAPVQPGVPVSKPSASEASMSENLLSEGLLLMEKKDYN
SARERFKEFMSKNPNSPKVSDAQFYLAESYYEEQWYEKAILEYQVVIAKYTKSAKRPAALYKQGLAFEQIGDKANAKARY
RDVVNLYSKTPEARLAKKKMDAN
>Mature_263_residues
MMKKRSFLFLPFVLLSACASQNDLSYVQGQVSQLKQESQTIKQQSAGSYSEMTQYREDIARLRGSINELQYNYQSAMKRL
DMEDSLQVSKTNELENRIARIEKYIGLASPEGQSNTPLPPVVKAPVQPGVPVSKPSASEASMSENLLSEGLLLMEKKDYN
SARERFKEFMSKNPNSPKVSDAQFYLAESYYEEQWYEKAILEYQVVIAKYTKSAKRPAALYKQGLAFEQIGDKANAKARY
RDVVNLYSKTPEARLAKKKMDAN

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=239, Percent_Identity=26.7782426778243, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29878; Mature: 29878

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]