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The map label for this gene is yjbC [C]

Identifier: 193212142

GI number: 193212142

Start: 503010

End: 503753

Strand: Direct

Name: yjbC [C]

Synonym: Cpar_0473

Alternate gene names: 193212142

Gene position: 503010-503753 (Clockwise)

Preceding gene: 193212141

Following gene: 193212143

Centisome position: 21.97

GC content: 59.01

Gene sequence:

>744_bases
ATGAAGCGATCCGCTCAGGATGAGAAGGTCAGAATCAACAAATATCTCGCCATGTGTGGCATTGCGTCGCGCCGCGCCGC
CGACCAGCTCGTGCTCGAAGGGCGGGTCATGGTCAACGGCCACGTTGCCGACCAGCCGGGCTTGCAGATCGATCCGAAGC
ACGATGAGGTGATCGTCGATGGGCGGCACATGGCGCAGCCTGAGCACAAGAAGGTTTACATTCTTTTCAACAAGCCGCGC
AACGTCATCACTACGAGCCACGACGAGCGTGATCGCCAGCAAATTCTCGACTTTGTCGATGTGCCTGAACGGGTTTTTCC
GGTCGGACGGCTCGACCGCAAGAGCACCGGCCTGCTTATTCTCACCAACGACGGCACGCTGGCGCATCGCTTGATGCACC
CTTCGTCGCTGGTGCAGAAAGAGTATCTCGCCGAACTGGATGCGAAGTTTCCGGGCTCGATGCTCTCCAAGCTGACCAGC
GGCATGAGGCTCAAGGATACGGGCGAAAAGGTGAGCCCGTGCCGTGCCAAAATTCTTGATGACGGCATGAGCGTGCTGGT
GAGCATCCACGAAGGCAAAAATCATCAGGTGCGCCGCATGTTCAGCACACTCGGTTTCGAGGTCAAGCGGCTCGACCGCG
TGGCCTATGCCGGACTGACCCCCGGAGAACTCCGGCGTGGCGAATGGCGCTACCTGAGCCGCAAGGAGGTCGAGCACCTC
TATCGGTTATGTGGCAAGGATTGA

Upstream 100 bases:

>100_bases
AAGAGATACTGCAAGAGCACGAAGAGCAGGAGTATCTGGCTGCTGGCGGTGAGCAATCGCCAGCCGATAACGATGAACCC
GCCCAAATGGAGGCACCCGA

Downstream 100 bases:

>100_bases
GTATATTGGCGGTGAAATTTTGGGCTGCTTCGCAAGTTAATCGTTGAGATCAACACGACGATCGGAGTGTAAGCCCACTT
GTTCTGCCAAACCATCGGCC

Product: pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKRSAQDEKVRINKYLAMCGIASRRAADQLVLEGRVMVNGHVADQPGLQIDPKHDEVIVDGRHMAQPEHKKVYILFNKPR
NVITTSHDERDRQQILDFVDVPERVFPVGRLDRKSTGLLILTNDGTLAHRLMHPSSLVQKEYLAELDAKFPGSMLSKLTS
GMRLKDTGEKVSPCRAKILDDGMSVLVSIHEGKNHQVRRMFSTLGFEVKRLDRVAYAGLTPGELRRGEWRYLSRKEVEHL
YRLCGKD

Sequences:

>Translated_247_residues
MKRSAQDEKVRINKYLAMCGIASRRAADQLVLEGRVMVNGHVADQPGLQIDPKHDEVIVDGRHMAQPEHKKVYILFNKPR
NVITTSHDERDRQQILDFVDVPERVFPVGRLDRKSTGLLILTNDGTLAHRLMHPSSLVQKEYLAELDAKFPGSMLSKLTS
GMRLKDTGEKVSPCRAKILDDGMSVLVSIHEGKNHQVRRMFSTLGFEVKRLDRVAYAGLTPGELRRGEWRYLSRKEVEHL
YRLCGKD
>Mature_247_residues
MKRSAQDEKVRINKYLAMCGIASRRAADQLVLEGRVMVNGHVADQPGLQIDPKHDEVIVDGRHMAQPEHKKVYILFNKPR
NVITTSHDERDRQQILDFVDVPERVFPVGRLDRKSTGLLILTNDGTLAHRLMHPSSLVQKEYLAELDAKFPGSMLSKLTS
GMRLKDTGEKVSPCRAKILDDGMSVLVSIHEGKNHQVRRMFSTLGFEVKRLDRVAYAGLTPGELRRGEWRYLSRKEVEHL
YRLCGKD

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=240, Percent_Identity=34.1666666666667, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1788510, Length=231, Percent_Identity=30.7359307359307, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787524, Length=251, Percent_Identity=32.2709163346614, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87081838, Length=187, Percent_Identity=32.620320855615, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28150; Mature: 28150

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSAQDEKVRINKYLAMCGIASRRAADQLVLEGRVMVNGHVADQPGLQIDPKHDEVIVD
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECEECCCCCCEECCCCCEEEEC
GRHMAQPEHKKVYILFNKPRNVITTSHDERDRQQILDFVDVPERVFPVGRLDRKSTGLLI
CHHHCCCCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEE
LTNDGTLAHRLMHPSSLVQKEYLAELDAKFPGSMLSKLTSGMRLKDTGEKVSPCRAKILD
EECCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCCCCCCHHHHHHHH
DGMSVLVSIHEGKNHQVRRMFSTLGFEVKRLDRVAYAGLTPGELRRGEWRYLSRKEVEHL
CCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHH
YRLCGKD
HHHHCCC
>Mature Secondary Structure
MKRSAQDEKVRINKYLAMCGIASRRAADQLVLEGRVMVNGHVADQPGLQIDPKHDEVIVD
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECEECCCCCCEECCCCCEEEEC
GRHMAQPEHKKVYILFNKPRNVITTSHDERDRQQILDFVDVPERVFPVGRLDRKSTGLLI
CHHHCCCCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEE
LTNDGTLAHRLMHPSSLVQKEYLAELDAKFPGSMLSKLTSGMRLKDTGEKVSPCRAKILD
EECCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCCCCCCHHHHHHHH
DGMSVLVSIHEGKNHQVRRMFSTLGFEVKRLDRVAYAGLTPGELRRGEWRYLSRKEVEHL
CCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHH
YRLCGKD
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]