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The map label for this gene is scpB [H]

Identifier: 193212141

GI number: 193212141

Start: 502387

End: 503013

Strand: Direct

Name: scpB [H]

Synonym: Cpar_0472

Alternate gene names: 193212141

Gene position: 502387-503013 (Clockwise)

Preceding gene: 193212140

Following gene: 193212142

Centisome position: 21.95

GC content: 58.05

Gene sequence:

>627_bases
GTGCAGGAACAGGACCGACAACTTCTCCAGTCTGTCGAAGCGCTTATCTTCGCTTCTGAAGAACCCGTCACGCCGCAGGC
TATCTGCCAGATTATCGGCGGAGAGTTCAGCTATCCCGATCTTCAATCGGCCGTTGAGGCGCTCAATCAGGAGTACGAGG
CGACCGGCCGCACCTTTCGCATTCATTTTCTTGCCGGCGGCTATCGCTTTCTGACTGATCCGGACCACGGCGATCTCGTG
CGGCAATTGCTCGCGCCGGTGATTCAGCGCCGTCTTTCACGCTCAATGCTGGAAGTGCTTTCCGTGATTGCCTGGCATCA
GCCGGTGACGAAAGGGGATATTCAGCAGATTCGCGGTGTCAGCCCCGATTACGCTATCGACCGGCTGCTTTCGCGCGGCC
TCGTTGAAGTGCGCGGGCGGGCGGACTCTCCCGGCAGGCCGCTGCAGTACGGCACGACGGCCGGGTTTCTCGATCTGTTC
CACCTGCCGAGTTTGAAAGATCTTCCCAAGTTACGAGAAATAAAAGAGATACTGCAAGAGCACGAAGAGCAGGAGTATCT
GGCTGCTGGCGGTGAGCAATCGCCAGCCGATAACGATGAACCCGCCCAAATGGAGGCACCCGAATGA

Upstream 100 bases:

>100_bases
AGGATTTGGGCATCGACGGCGAATTCTCCACGGCCCGAAAGAAAGAGTGCTGCCGCTGAGCCCGGACGAATCCTCGCGCT
TGCAACCATCATCAGTCATC

Downstream 100 bases:

>100_bases
AGCGATCCGCTCAGGATGAGAAGGTCAGAATCAACAAATATCTCGCCATGTGTGGCATTGCGTCGCGCCGCGCCGCCGAC
CAGCTCGTGCTCGAAGGGCG

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MQEQDRQLLQSVEALIFASEEPVTPQAICQIIGGEFSYPDLQSAVEALNQEYEATGRTFRIHFLAGGYRFLTDPDHGDLV
RQLLAPVIQRRLSRSMLEVLSVIAWHQPVTKGDIQQIRGVSPDYAIDRLLSRGLVEVRGRADSPGRPLQYGTTAGFLDLF
HLPSLKDLPKLREIKEILQEHEEQEYLAAGGEQSPADNDEPAQMEAPE

Sequences:

>Translated_208_residues
MQEQDRQLLQSVEALIFASEEPVTPQAICQIIGGEFSYPDLQSAVEALNQEYEATGRTFRIHFLAGGYRFLTDPDHGDLV
RQLLAPVIQRRLSRSMLEVLSVIAWHQPVTKGDIQQIRGVSPDYAIDRLLSRGLVEVRGRADSPGRPLQYGTTAGFLDLF
HLPSLKDLPKLREIKEILQEHEEQEYLAAGGEQSPADNDEPAQMEAPE
>Mature_208_residues
MQEQDRQLLQSVEALIFASEEPVTPQAICQIIGGEFSYPDLQSAVEALNQEYEATGRTFRIHFLAGGYRFLTDPDHGDLV
RQLLAPVIQRRLSRSMLEVLSVIAWHQPVTKGDIQQIRGVSPDYAIDRLLSRGLVEVRGRADSPGRPLQYGTTAGFLDLF
HLPSLKDLPKLREIKEILQEHEEQEYLAAGGEQSPADNDEPAQMEAPE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 23319; Mature: 23319

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEQDRQLLQSVEALIFASEEPVTPQAICQIIGGEFSYPDLQSAVEALNQEYEATGRTFR
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEE
IHFLAGGYRFLTDPDHGDLVRQLLAPVIQRRLSRSMLEVLSVIAWHQPVTKGDIQQIRGV
EEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
SPDYAIDRLLSRGLVEVRGRADSPGRPLQYGTTAGFLDLFHLPSLKDLPKLREIKEILQE
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
HEEQEYLAAGGEQSPADNDEPAQMEAPE
HHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQEQDRQLLQSVEALIFASEEPVTPQAICQIIGGEFSYPDLQSAVEALNQEYEATGRTFR
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEE
IHFLAGGYRFLTDPDHGDLVRQLLAPVIQRRLSRSMLEVLSVIAWHQPVTKGDIQQIRGV
EEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
SPDYAIDRLLSRGLVEVRGRADSPGRPLQYGTTAGFLDLFHLPSLKDLPKLREIKEILQE
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
HEEQEYLAAGGEQSPADNDEPAQMEAPE
HHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA