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The map label for this gene is ybjY [C]

Identifier: 193212128

GI number: 193212128

Start: 489768

End: 490856

Strand: Direct

Name: ybjY [C]

Synonym: Cpar_0459

Alternate gene names: 193212128

Gene position: 489768-490856 (Clockwise)

Preceding gene: 193212125

Following gene: 193212129

Centisome position: 21.39

GC content: 58.86

Gene sequence:

>1089_bases
ATGCAGAATCTGCAGAAAATGCTTCCGAAGTTTTCGATAGCCTTTGTGATTGTGTTTGTGGCTGTCTCCGCTTATCTGCT
GACCCGCGGTAACACGGTTGAAGTCGAGGCCGCAAAGATCACGAGATCGGAGTTGGTCGAGGCGGTTTATGCTACTGGCT
ATGTCGAGGCGGAGAACATTGCTGCGCTCAGTGCCGAGTTTTCGGGAACAGTGCGCACTGTCGGGGCGCTTGAAGGAGAA
CGCGTCAAAAAGGGCGAGGAGATCATCGTGTTCGACAGCCCGCAGCCCCGTCTTGCCGTCGAGGAGGCGCGCGCGGCGGT
GGCCGAGGAGCAGGCCGCGGCCAGGGACGACATCCTCAAACTGCAGCGCAACCGGATGCTTTTCAAGGCGGGAGCGATTT
CTCGCCAGCAGCTTGACGAGGCGGAACGCAACAGCGCTCAGTCGCTCGAATCGCTCCGGCAGCGACAGTTGCAGCTCCGC
AGCCGCGAGGATGACCTGACGAAGCTCTCCGTCGTTGCGCCGTTCGACGGGATGCTGACTCTCCAGAAGGTCAAGGCGGG
TGACTATGTCCAGGCCAATACCGAAGTGGCCGAAGTGGCCGATACTTCCAGCTACCTCGTGGTTGTCGAAGTCGATGAGC
TTGACGTGCCTCGCCTGCGCACCGGCCTGAACGCCGTGATCGCCTTCGACTCGATGCCCGACAAGCGCTTCGATGCCACC
GTCGTGCGCATCGTTCCGCAAACCGATCGGGTGACCAAGACCTCGCGGGTTTATCTTCGCCTGAACAAACCGGTTGAGGC
GATTCAGGGCGGCATGACCGCTACGGCCAACATCATCTATAACGTCAAAAAGGGGACACTTCTGGCCAGGAAAAGCTCTG
TGTTCGAGCAGGATCGGAAAGCGTATGTCTGGAAGATCGTTAGCGGAAAGTTGAAGAAGCAGGCGGTTCGCACCGGTGAC
AGCGATCTGACCTTCATCGAGATTCTTGACGGTCTCGCCGAGGGTGATCAGGTGGTCACTTCGCCCCAGGAGAACTACCG
CGATGGCATGGAGACGCGCATCGTGGAGGATCGCAAAAAGAGCTCCTGA

Upstream 100 bases:

>100_bases
TGACGGTCGAAAAAAAGTAAGTGACAGTGAAAAGCCTTTCAAGTTGTGCCGCTGGTAGCCGGCATAATGTGTAACCGATA
AATTCCTGACCCCTGACGAC

Downstream 100 bases:

>100_bases
ACTGAATAGGAGAGCCGCGATGCCTGCAAAACGGATAGCTGTGATTCTTGCCGCGCATGGCGAAGCTGAAACTTCGGGTT
TCCTTGAGAATTACCGGGTG

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MQNLQKMLPKFSIAFVIVFVAVSAYLLTRGNTVEVEAAKITRSELVEAVYATGYVEAENIAALSAEFSGTVRTVGALEGE
RVKKGEEIIVFDSPQPRLAVEEARAAVAEEQAAARDDILKLQRNRMLFKAGAISRQQLDEAERNSAQSLESLRQRQLQLR
SREDDLTKLSVVAPFDGMLTLQKVKAGDYVQANTEVAEVADTSSYLVVVEVDELDVPRLRTGLNAVIAFDSMPDKRFDAT
VVRIVPQTDRVTKTSRVYLRLNKPVEAIQGGMTATANIIYNVKKGTLLARKSSVFEQDRKAYVWKIVSGKLKKQAVRTGD
SDLTFIEILDGLAEGDQVVTSPQENYRDGMETRIVEDRKKSS

Sequences:

>Translated_362_residues
MQNLQKMLPKFSIAFVIVFVAVSAYLLTRGNTVEVEAAKITRSELVEAVYATGYVEAENIAALSAEFSGTVRTVGALEGE
RVKKGEEIIVFDSPQPRLAVEEARAAVAEEQAAARDDILKLQRNRMLFKAGAISRQQLDEAERNSAQSLESLRQRQLQLR
SREDDLTKLSVVAPFDGMLTLQKVKAGDYVQANTEVAEVADTSSYLVVVEVDELDVPRLRTGLNAVIAFDSMPDKRFDAT
VVRIVPQTDRVTKTSRVYLRLNKPVEAIQGGMTATANIIYNVKKGTLLARKSSVFEQDRKAYVWKIVSGKLKKQAVRTGD
SDLTFIEILDGLAEGDQVVTSPQENYRDGMETRIVEDRKKSS
>Mature_362_residues
MQNLQKMLPKFSIAFVIVFVAVSAYLLTRGNTVEVEAAKITRSELVEAVYATGYVEAENIAALSAEFSGTVRTVGALEGE
RVKKGEEIIVFDSPQPRLAVEEARAAVAEEQAAARDDILKLQRNRMLFKAGAISRQQLDEAERNSAQSLESLRQRQLQLR
SREDDLTKLSVVAPFDGMLTLQKVKAGDYVQANTEVAEVADTSSYLVVVEVDELDVPRLRTGLNAVIAFDSMPDKRFDAT
VVRIVPQTDRVTKTSRVYLRLNKPVEAIQGGMTATANIIYNVKKGTLLARKSSVFEQDRKAYVWKIVSGKLKKQAVRTGD
SDLTFIEILDGLAEGDQVVTSPQENYRDGMETRIVEDRKKSS

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081796, Length=352, Percent_Identity=25.8522727272727, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082036, Length=336, Percent_Identity=22.3214285714286, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789637, Length=225, Percent_Identity=24.4444444444444, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 40136; Mature: 40136

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLQKMLPKFSIAFVIVFVAVSAYLLTRGNTVEVEAAKITRSELVEAVYATGYVEAENI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCEECCCC
AALSAEFSGTVRTVGALEGERVKKGEEIIVFDSPQPRLAVEEARAAVAEEQAAARDDILK
EEEEHHCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LQRNRMLFKAGAISRQQLDEAERNSAQSLESLRQRQLQLRSREDDLTKLSVVAPFDGMLT
HHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEE
LQKVKAGDYVQANTEVAEVADTSSYLVVVEVDELDVPRLRTGLNAVIAFDSMPDKRFDAT
EEEECCCCEEECCCHHHHHCCCCCEEEEEEECCCCCCHHHHCCEEEEEECCCCCCCCCCE
VVRIVPQTDRVTKTSRVYLRLNKPVEAIQGGMTATANIIYNVKKGTLLARKSSVFEQDRK
EEEEECCCCCCCCEEEEEEEECCCHHHHHCCCEEEEEEEEEECCCEEEEHHHHHHHHHHH
AYVWKIVSGKLKKQAVRTGDSDLTFIEILDGLAEGDQVVTSPQENYRDGMETRIVEDRKK
EEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCHHHHHCCHHHHHHHHHCC
SS
CC
>Mature Secondary Structure
MQNLQKMLPKFSIAFVIVFVAVSAYLLTRGNTVEVEAAKITRSELVEAVYATGYVEAENI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCEECCCC
AALSAEFSGTVRTVGALEGERVKKGEEIIVFDSPQPRLAVEEARAAVAEEQAAARDDILK
EEEEHHCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LQRNRMLFKAGAISRQQLDEAERNSAQSLESLRQRQLQLRSREDDLTKLSVVAPFDGMLT
HHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEE
LQKVKAGDYVQANTEVAEVADTSSYLVVVEVDELDVPRLRTGLNAVIAFDSMPDKRFDAT
EEEECCCCEEECCCHHHHHCCCCCEEEEEEECCCCCCHHHHCCEEEEEECCCCCCCCCCE
VVRIVPQTDRVTKTSRVYLRLNKPVEAIQGGMTATANIIYNVKKGTLLARKSSVFEQDRK
EEEEECCCCCCCCEEEEEEEECCCHHHHHCCCEEEEEEEEEECCCEEEEHHHHHHHHHHH
AYVWKIVSGKLKKQAVRTGDSDLTFIEILDGLAEGDQVVTSPQENYRDGMETRIVEDRKK
EEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCHHHHHCCHHHHHHHHHCC
SS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]