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The map label for this gene is ccsA [H]

Identifier: 193212069

GI number: 193212069

Start: 424946

End: 425743

Strand: Direct

Name: ccsA [H]

Synonym: Cpar_0399

Alternate gene names: 193212069

Gene position: 424946-425743 (Clockwise)

Preceding gene: 193212068

Following gene: 193212073

Centisome position: 18.56

GC content: 59.52

Gene sequence:

>798_bases
ATGACCCTGGTCGACTTTCCAACGATGGCCTTTGCAGCAGTAGTTTGCTGGACGACTGGCAGCTTCTTGCAGTTTCCGGC
GAAGCGCTCAAAAGCTTTCAGCGTCGCCTCCTGGCTGCTCATGATTTCCGGCACGGTTGTGCTGACCTGGTTCCTGGCGT
CCTACTGGATCGCCCTCGAACGTCCGCCGCTGCGCACGCTTGGCGAGACGCGGCTCTGGTACGCCACCTTTATTCCGGTG
ATCGGATTTCTGGTGGAGTACCGCTACGGCATCCGCTGGCTCAAGTACTACTGCATGGCTCTGGCCGCACTGTTCCTCGG
GATCAACTACATGCACCCCGACGTTTTCCAGAAGGCGCTCATGCCTGCGTTGCAGAGCGTGTGGTTTGTGCCGCACGTGG
TGGTTTATCTTGTCGCTTACGCGCTGCTGGCGGCCTCGGCGGTCTCCGGGTGGCACAATGTGATTCTCAACTTCCGGAAC
AAGCGTTCCGACAAGTCGGAGTCGATGTCGCACTACCTCGCGTTGCTGGGATTCGTGCTGTTGACCTTCGGGCTGATTTT
TGGCGCGCTCTGGGCCAAGGAGGCGTGGGGGCACTACTGGACGTGGGATCCGAAAGAGACCTGGGCTTTCATCTCGTGGC
TGGCCTACCTCGGCTACCTGCATCTGGTTTCCATGAAGACCGATTCGCGGAAGCTCCAGTGGTATCTTGGCCTGGCCTTC
ATCGTGCTGCTGGTCTGCTGGTTCGGCGTCAACTACCTGCCCTCAGCGCAGAACAGCGTGCACACCTACTCGGGGTGA

Upstream 100 bases:

>100_bases
TTCGTGACCCGTGGCTTCCGGCGGTCTATGTCGGCTTTTTCATGATCATGGCAGGGAACGTGCTCTTTTTCTGGAAGGGC
ATTAAAAAGATGGAGGCGGC

Downstream 100 bases:

>100_bases
GAGCGGGAGAAAGTGTTTCTGTCCGTCATTCCCGCGAAAGCGGGAACCCATGTACGTATTCCGGATTCTGGATTCCCGCT
TTCGCGGGAATGACGAGGAA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTLVDFPTMAFAAVVCWTTGSFLQFPAKRSKAFSVASWLLMISGTVVLTWFLASYWIALERPPLRTLGETRLWYATFIPV
IGFLVEYRYGIRWLKYYCMALAALFLGINYMHPDVFQKALMPALQSVWFVPHVVVYLVAYALLAASAVSGWHNVILNFRN
KRSDKSESMSHYLALLGFVLLTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVSMKTDSRKLQWYLGLAF
IVLLVCWFGVNYLPSAQNSVHTYSG

Sequences:

>Translated_265_residues
MTLVDFPTMAFAAVVCWTTGSFLQFPAKRSKAFSVASWLLMISGTVVLTWFLASYWIALERPPLRTLGETRLWYATFIPV
IGFLVEYRYGIRWLKYYCMALAALFLGINYMHPDVFQKALMPALQSVWFVPHVVVYLVAYALLAASAVSGWHNVILNFRN
KRSDKSESMSHYLALLGFVLLTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVSMKTDSRKLQWYLGLAF
IVLLVCWFGVNYLPSAQNSVHTYSG
>Mature_264_residues
TLVDFPTMAFAAVVCWTTGSFLQFPAKRSKAFSVASWLLMISGTVVLTWFLASYWIALERPPLRTLGETRLWYATFIPVI
GFLVEYRYGIRWLKYYCMALAALFLGINYMHPDVFQKALMPALQSVWFVPHVVVYLVAYALLAASAVSGWHNVILNFRNK
RSDKSESMSHYLALLGFVLLTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVSMKTDSRKLQWYLGLAFI
VLLVCWFGVNYLPSAQNSVHTYSG

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30467; Mature: 30336

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVDFPTMAFAAVVCWTTGSFLQFPAKRSKAFSVASWLLMISGTVVLTWFLASYWIALE
CCCCCCHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RPPLRTLGETRLWYATFIPVIGFLVEYRYGIRWLKYYCMALAALFLGINYMHPDVFQKAL
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
MPALQSVWFVPHVVVYLVAYALLAASAVSGWHNVILNFRNKRSDKSESMSHYLALLGFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVSMKTDSRKLQWYLGLAF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IVLLVCWFGVNYLPSAQNSVHTYSG
HHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLVDFPTMAFAAVVCWTTGSFLQFPAKRSKAFSVASWLLMISGTVVLTWFLASYWIALE
CCCCCHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RPPLRTLGETRLWYATFIPVIGFLVEYRYGIRWLKYYCMALAALFLGINYMHPDVFQKAL
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
MPALQSVWFVPHVVVYLVAYALLAASAVSGWHNVILNFRNKRSDKSESMSHYLALLGFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVSMKTDSRKLQWYLGLAF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IVLLVCWFGVNYLPSAQNSVHTYSG
HHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA