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The map label for this gene is ysgA [H]

Identifier: 193211994

GI number: 193211994

Start: 341040

End: 341810

Strand: Direct

Name: ysgA [H]

Synonym: Cpar_0323

Alternate gene names: 193211994

Gene position: 341040-341810 (Clockwise)

Preceding gene: 193211993

Following gene: 193211995

Centisome position: 14.9

GC content: 64.33

Gene sequence:

>771_bases
ATGCTGGGACGGCTGGCCAAGTTGTCGCGCAAGAAGTATCGCGACAGCGAAGGGCTTTTTCTGGCCGAGGGGCTGCGCAC
GGTGAGCGAGCTGCTCGACAGCCTGCCCGACCTGTCGATGCTGCACGCGCTCGTGCTCGACGAAGCGGCCGCCGGTCAGC
TCGATGGCCTGAAGCGTTTTGCTGGAAAGGTGTGGCTCGGCGATGCGGATGCGTTCAAACGCCTCGCCCAGACCGCTTCG
CCGCAGGGCGTGTGCGCGGCGTTTCGCAAGCCGGAGATGGGCGAATTCCGTCCCGCCGAACGCTCATTCGTCGTGGCGCT
CGACGACGTGCAGGATCCGGGCAACGTCGGCACGATTATCCGCACAGCGGCCTGGTTCGGCGCGGAAGCGGTTATCTGCG
GGCCAGGTACGGCTGATCCCTGGAACGCCAAAACGGTCAGATCGACCGCCGGAAGCATTTTCGCGCTTCGCATCATCGAC
GTCCCCGACCTCGCCGCCGAGCTGAAACGCCTGCAAGCCGCAGGCTTCACGGTAGCCGCCGCTGCGCTCGACGGGCAGGA
TTACCGCTCCTTCGGCGAGTGGCCCGACCGCCGCGCGCTCGTCATCGGTAACGAAGCCAACGGCATAAGCGAAAAAGTGC
TCGCCCTCGCCGACAGCCGTCTCCTCATTCCTCACGCTGGAACCCACCCCGCCGTCGAATCTCTCAACGCTTCGGTGTCT
GCGGGGATTCTGATGGCAAGAATTGCGCTTCGCGCGAATTATGAATGTTGA

Upstream 100 bases:

>100_bases
CGACCGAGTTTTCCCACGATCCGAAAGCGGTCATTGAGCGCTTCAAACGGTCGGCAGGCAAGCGATGAGGCGAGAAACGT
ATCCACCGCTGAGCAAGACG

Downstream 100 bases:

>100_bases
ATTATGAATTGAAGAGTGGGTGGGTTGTAGGGGCAATCCCTTGCGGTTGCCATTGTCGTCTTTGAAGTCCTTGTTGTCTT
TTTGCCGAGCTGGAGCTCGG

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLGRLAKLSRKKYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRFAGKVWLGDADAFKRLAQTAS
PQGVCAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIID
VPDLAAELKRLQAAGFTVAAAALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVS
AGILMARIALRANYEC

Sequences:

>Translated_256_residues
MLGRLAKLSRKKYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRFAGKVWLGDADAFKRLAQTAS
PQGVCAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIID
VPDLAAELKRLQAAGFTVAAAALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVS
AGILMARIALRANYEC
>Mature_256_residues
MLGRLAKLSRKKYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRFAGKVWLGDADAFKRLAQTAS
PQGVCAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIID
VPDLAAELKRLQAAGFTVAAAALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVS
AGILMARIALRANYEC

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=294, Percent_Identity=26.1904761904762, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI40068479, Length=188, Percent_Identity=31.3829787234043, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI1790623, Length=146, Percent_Identity=30.1369863013699, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555908, Length=287, Percent_Identity=28.9198606271777, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27301; Mature: 27301

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGRLAKLSRKKYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRF
CCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHH
AGKVWLGDADAFKRLAQTASPQGVCAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGTII
HCEEEECCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
RTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIIDVPDLAAELKRLQAAGFTVAA
HHHHHHCCCEEEECCCCCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEE
AALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVS
EECCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHCCHHH
AGILMARIALRANYEC
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLGRLAKLSRKKYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRF
CCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHH
AGKVWLGDADAFKRLAQTASPQGVCAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGTII
HCEEEECCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
RTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIIDVPDLAAELKRLQAAGFTVAA
HHHHHHCCCEEEECCCCCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEE
AALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVS
EECCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHCCHHH
AGILMARIALRANYEC
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]