Click here to switch to the map view.

The map label for this gene is ydiK [C]

Identifier: 193211909

GI number: 193211909

Start: 244041

End: 245147

Strand: Direct

Name: ydiK [C]

Synonym: Cpar_0235

Alternate gene names: 193211909

Gene position: 244041-245147 (Clockwise)

Preceding gene: 193211908

Following gene: 193211913

Centisome position: 10.66

GC content: 54.47

Gene sequence:

>1107_bases
ATGTCACGGGTGAATACACCGCAATTCAACAAAATCGTCGTCCTTGTGGCGGCATTGTTGATTTCTGCGCTTTTTCTTGC
CATGATCCGTCACTTTCTGGTGACCATTCTACTGGCAGGTATCTTCGCCGGCCTGGCTTATCCTCTGTTCAGCCGCTTCC
TTTCGCTGTCGGGCGAACGCCGAAGTCTTAGCGCCATCCTGACGCTCACCATTTTTTTCCTGATCGTGTTTATGCCGCTG
GTAGCTGTTTTTTCCATCGTGGTGGGACAGGCGATTTCTTTGAGCAAGACGGTCATCCCGCTGGTGCGCGATCAGCTTCA
GGATCCCGAAGCTTTGCCGAGTCTTATTTCGGGCCTGCCCTTTTACCATGACATTGAAAAATATAGCGACCTGATTCTCG
GGCGAATCGCTGAAGTTCTCGGTAATCTCGGTACGACGGTTATCAGCAGCTTTTCAGCGTTTACCTGGTCGGCACTTTAT
GATATAGCGCTCTTCATCATCTTCTGGTACACGATGTTCTTTCTGCTCAGAGACGGTCACACGCTCATGGCAAAAATCCA
GAACTATCTCCCTCTGGCCGAGAATGATCAGAAGCGTTTGCTCGACCGTTTCGTTTCGGTGACTAGGGCTTCGCTGAAAG
GTTCGCTGATCATTGCCGTGGTGCAGGGCAGTCTTGCCGGCTTGGCGTTCCATGTTGCAGGTATCGAAAATGCTGTGTTC
TGGGGCGCTATCATGGCGATGCTCTCGATTCTGCCGCTCATCGGTTCGCCGCTGATCTGGGTGCCGGCGGTGATCATCCA
GGCGTTTTCGGGCAACTACGTGGAGGCGATCGGCTTGCTCCTGTTCTGCAGCATTGTGGTCGGGCAGATCGACAATGTGA
TGCGTCCGATTCTGGTTGGCCGCGATACCAGCATGCACGAGCTGTTCATCTTTTTCGGCACACTCGGCGGTATCGGCATG
TTCGGCCTGCCCGGCTTCATCATCGGGCCGGTCGTGGCGGCCCTCTTCGTGACGGTGTGGGATATTTACGGAGAGACCTT
CAGCGAGCCGCTTGTGGAAGGGCATTCAGCCGGTCAGGCGGCTGGAGGCGATGGTTCGACGCCTTAA

Upstream 100 bases:

>100_bases
GCTCTGAGGCGTTCCTCTCTTTTTGCACAATGGCGGCGGCTGTGTACATTGAAGACGATTCCAGATGACCGGAGATGACT
TCTGAACCAGTTGCAACGCT

Downstream 100 bases:

>100_bases
GATCGTTGACGGACATATCTGAAAAGCAATAAAAAAAGCCGATCCGGTTCTGTCCAGGTCGGCTTTTTTTTATGAAGTCC
GGTTGCTGCGGAAGTTCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSRVNTPQFNKIVVLVAALLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGERRSLSAILTLTIFFLIVFMPL
VAVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISGLPFYHDIEKYSDLILGRIAEVLGNLGTTVISSFSAFTWSALY
DIALFIIFWYTMFFLLRDGHTLMAKIQNYLPLAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVF
WGAIMAMLSILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVGRDTSMHELFIFFGTLGGIGM
FGLPGFIIGPVVAALFVTVWDIYGETFSEPLVEGHSAGQAAGGDGSTP

Sequences:

>Translated_368_residues
MSRVNTPQFNKIVVLVAALLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGERRSLSAILTLTIFFLIVFMPL
VAVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISGLPFYHDIEKYSDLILGRIAEVLGNLGTTVISSFSAFTWSALY
DIALFIIFWYTMFFLLRDGHTLMAKIQNYLPLAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVF
WGAIMAMLSILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVGRDTSMHELFIFFGTLGGIGM
FGLPGFIIGPVVAALFVTVWDIYGETFSEPLVEGHSAGQAAGGDGSTP
>Mature_367_residues
SRVNTPQFNKIVVLVAALLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGERRSLSAILTLTIFFLIVFMPLV
AVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISGLPFYHDIEKYSDLILGRIAEVLGNLGTTVISSFSAFTWSALYD
IALFIIFWYTMFFLLRDGHTLMAKIQNYLPLAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVFW
GAIMAMLSILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVGRDTSMHELFIFFGTLGGIGMF
GLPGFIIGPVVAALFVTVWDIYGETFSEPLVEGHSAGQAAGGDGSTP

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=358, Percent_Identity=26.536312849162, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39894; Mature: 39763

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVNTPQFNKIVVLVAALLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RSLSAILTLTIFFLIVFMPLVAVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
FYHDIEKYSDLILGRIAEVLGNLGTTVISSFSAFTWSALYDIALFIIFWYTMFFLLRDGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TLMAKIQNYLPLAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVF
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHH
WGAIMAMLSILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RDTSMHELFIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWDIYGETFSEPLVEGHSAGQA
CCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGGDGSTP
CCCCCCCC
>Mature Secondary Structure 
SRVNTPQFNKIVVLVAALLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RSLSAILTLTIFFLIVFMPLVAVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
FYHDIEKYSDLILGRIAEVLGNLGTTVISSFSAFTWSALYDIALFIIFWYTMFFLLRDGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TLMAKIQNYLPLAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVF
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHH
WGAIMAMLSILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RDTSMHELFIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWDIYGETFSEPLVEGHSAGQA
CCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGGDGSTP
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]