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The map label for this gene is comF [H]

Identifier: 193211907

GI number: 193211907

Start: 242409

End: 243197

Strand: Direct

Name: comF [H]

Synonym: Cpar_0233

Alternate gene names: 193211907

Gene position: 242409-243197 (Clockwise)

Preceding gene: 193211906

Following gene: 193211908

Centisome position: 10.59

GC content: 60.96

Gene sequence:

>789_bases
ATGATTGAGAGGCTAGCGCATTCGTTTGGTGCTCTCTCGCGTCCGCTTGGTTCACTCGCGCAATCGCTTGGAACACTTGC
GCGTCCGCTTGAGGGGCTCACGCATCTGCTCTTTCCACAGGTTTGCGTGGTGTGTCGTAAAACGCTCACCGCGCCGGAGC
AGCAGCTTTGTTCAGCATGCCTCACTGATTTCGCCCCTTTTCCCAATCCTCTGGCAGGCGGGCAGGCCGTGATCAGGAGC
GTCAATTCCCATTTCGGCCTCGGCGCCATTCCATCCGCCGCCTGGAGCCTCTATCCTTACAGGAGCAACGGCGCCCTGCA
CGATGCGCTGCACGCCATGAAGTACGAGGGCTTGTTTCCACTCGGGCGTCTGTTCGGCAGGTGGCTCGGCGAGCTTGTCC
AATCCGCCGGAGGGGCGGGTGAGGTGGAGGCGATCGTGCCGGTGCCGCTGCATCCACTCAAGCGGATCGAACGAAGCTAT
AACCAGTCCGAAGCGATTGCCTCCGGCATGGCCGAGGTGCTCGATCTGCCGGTCGTGGAAGATTCCATCGAGCGGAGCGC
TTACACCGGATCGCAGACCGGCCTGGGCATTACCGAACGCAGAAAAAACATGGCAGGTGTGTTCCGACCGGTTACTCGCA
ATTCCCACCGGATCAGCGGCAGGGTCGTGCTGGTCGACGATGTGCTGACGACCGGAGCTACTATGGTGGCCGCAGCCTCG
GCGCTCAAGGAGGCTGGTGTGGACGAAGTGGCGTTTGCGGTCGTGGCCGTTACAGAAGAAAAAGAGTAG

Upstream 100 bases:

>100_bases
CACGACGGACTGGAGATCGTTCCGGCCAGGCTTGGCAACAAAGCCGGGATGTATGGCGCTGCCGCGCTCTGCTTCGCTTC
CGGCAAGCCGCTCAGGAGCG

Downstream 100 bases:

>100_bases
CGCTTCATGGATCTGTTTTACGTACTTCCGCATCAGCTCGATCTCGACCGCGGGCGTGCCTCGATCGGTGGAGAGGAGTT
TCACCACCTCGCGCGCGTGC

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIERLAHSFGALSRPLGSLAQSLGTLARPLEGLTHLLFPQVCVVCRKTLTAPEQQLCSACLTDFAPFPNPLAGGQAVIRS
VNSHFGLGAIPSAAWSLYPYRSNGALHDALHAMKYEGLFPLGRLFGRWLGELVQSAGGAGEVEAIVPVPLHPLKRIERSY
NQSEAIASGMAEVLDLPVVEDSIERSAYTGSQTGLGITERRKNMAGVFRPVTRNSHRISGRVVLVDDVLTTGATMVAAAS
ALKEAGVDEVAFAVVAVTEEKE

Sequences:

>Translated_262_residues
MIERLAHSFGALSRPLGSLAQSLGTLARPLEGLTHLLFPQVCVVCRKTLTAPEQQLCSACLTDFAPFPNPLAGGQAVIRS
VNSHFGLGAIPSAAWSLYPYRSNGALHDALHAMKYEGLFPLGRLFGRWLGELVQSAGGAGEVEAIVPVPLHPLKRIERSY
NQSEAIASGMAEVLDLPVVEDSIERSAYTGSQTGLGITERRKNMAGVFRPVTRNSHRISGRVVLVDDVLTTGATMVAAAS
ALKEAGVDEVAFAVVAVTEEKE
>Mature_262_residues
MIERLAHSFGALSRPLGSLAQSLGTLARPLEGLTHLLFPQVCVVCRKTLTAPEQQLCSACLTDFAPFPNPLAGGQAVIRS
VNSHFGLGAIPSAAWSLYPYRSNGALHDALHAMKYEGLFPLGRLFGRWLGELVQSAGGAGEVEAIVPVPLHPLKRIERSY
NQSEAIASGMAEVLDLPVVEDSIERSAYTGSQTGLGITERRKNMAGVFRPVTRNSHRISGRVVLVDDVLTTGATMVAAAS
ALKEAGVDEVAFAVVAVTEEKE

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27885; Mature: 27885

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERLAHSFGALSRPLGSLAQSLGTLARPLEGLTHLLFPQVCVVCRKTLTAPEQQLCSAC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LTDFAPFPNPLAGGQAVIRSVNSHFGLGAIPSAAWSLYPYRSNGALHDALHAMKYEGLFP
HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHEECEECCCCCHHHHHHHHHHCCCCH
LGRLFGRWLGELVQSAGGAGEVEAIVPVPLHPLKRIERSYNQSEAIASGMAEVLDLPVVE
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHH
DSIERSAYTGSQTGLGITERRKNMAGVFRPVTRNSHRISGRVVLVDDVLTTGATMVAAAS
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
ALKEAGVDEVAFAVVAVTEEKE
HHHHCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIERLAHSFGALSRPLGSLAQSLGTLARPLEGLTHLLFPQVCVVCRKTLTAPEQQLCSAC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LTDFAPFPNPLAGGQAVIRSVNSHFGLGAIPSAAWSLYPYRSNGALHDALHAMKYEGLFP
HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHEECEECCCCCHHHHHHHHHHCCCCH
LGRLFGRWLGELVQSAGGAGEVEAIVPVPLHPLKRIERSYNQSEAIASGMAEVLDLPVVE
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHH
DSIERSAYTGSQTGLGITERRKNMAGVFRPVTRNSHRISGRVVLVDDVLTTGATMVAAAS
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
ALKEAGVDEVAFAVVAVTEEKE
HHHHCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]