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The map label for this gene is yxkH [H]

Identifier: 193214207

GI number: 193214207

Start: 570203

End: 571015

Strand: Direct

Name: yxkH [H]

Synonym: Ctha_0488

Alternate gene names: 193214207

Gene position: 570203-571015 (Clockwise)

Preceding gene: 193214206

Following gene: 193214208

Centisome position: 17.31

GC content: 45.51

Gene sequence:

>813_bases
GTGAACTCATCATCAAATTTCTGCTCATTTCGGCGAAGCGCGCTGTTTGGATGGGCAGTTTTCATTAATTTTGTTTGTTT
TCAGAAGCTCGACAATCAAACCTACATGCAATCGGTTTTAAGCTATCACAAAATTACCAGCAGAGTTGATTTTGGCATTT
GCACTCGCACCCCAAAAGATTTCCGTAAAGATGTTGAATTCATCGCCGCGTTGCCTTCTGAGAAGCGCCCCATTGTTTCG
TTCGATGACGGCTACACCGACACGTACGAGGCAGCTTTTCCCATTCTTTCGGAATATGGTTTAACTGGCCAAGTTTTTGT
TATCACAGATGCGATCGGCAAACCAAACTCCTGGGACGCTAATTTTTTCGGAGAATTTCAACATATTGAGCTTTCGCAAG
TTCGTGAGCTGGCTCAGGCTGGCTGGGAAATTGGCAGCCACACCAAAACCCATCGCGCTTTAACCGTGCTTTCTTTAAGC
GCGCTTCGCGAGGAACTGGAAACGTCAAAATGGTTTTTGGAAGATGCTATCGGTCAACCGGTCACATCAATTTCTTTTCC
ATTTGGAAAATTCAATGAACAAGTGCTTCAAGTTTGTCGCGAAGTTGGCTATGAACGCGCCATCTCAATTTCACGGCGCA
GCCAGGATGGTTTTGTTGAGCGCAGCCTTGCGGTTTATCGCTTCGACCGGCGCGCTCACCTAAAAGCCAAACTTAACAAA
AACAAGCTTGAACTTTGGCGACTTCAAACCATTAATGCGTTTTCAACGCTCACCGTACTTATGCACCACATAAACTCCTT
TAACCGCGGATAA

Upstream 100 bases:

>100_bases
TCTGAAACATATCTACGGATGAACTCATCCGAACCCAATTTTTCTTACAAGCAGGTTTTTCACAGCCTGCTTTTTTATTG
CCATTTTTGAAATCTGCTAT

Downstream 100 bases:

>100_bases
CCTGTTATGCTCGAACCACACAACGAACGTTATTTTCTTTTAGCACTTGCGACGCTATCCGCCATTTACTTCGTCGCAGT
TATTCACGAAGCGCTTTCTC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MNSSSNFCSFRRSALFGWAVFINFVCFQKLDNQTYMQSVLSYHKITSRVDFGICTRTPKDFRKDVEFIAALPSEKRPIVS
FDDGYTDTYEAAFPILSEYGLTGQVFVITDAIGKPNSWDANFFGEFQHIELSQVRELAQAGWEIGSHTKTHRALTVLSLS
ALREELETSKWFLEDAIGQPVTSISFPFGKFNEQVLQVCREVGYERAISISRRSQDGFVERSLAVYRFDRRAHLKAKLNK
NKLELWRLQTINAFSTLTVLMHHINSFNRG

Sequences:

>Translated_270_residues
MNSSSNFCSFRRSALFGWAVFINFVCFQKLDNQTYMQSVLSYHKITSRVDFGICTRTPKDFRKDVEFIAALPSEKRPIVS
FDDGYTDTYEAAFPILSEYGLTGQVFVITDAIGKPNSWDANFFGEFQHIELSQVRELAQAGWEIGSHTKTHRALTVLSLS
ALREELETSKWFLEDAIGQPVTSISFPFGKFNEQVLQVCREVGYERAISISRRSQDGFVERSLAVYRFDRRAHLKAKLNK
NKLELWRLQTINAFSTLTVLMHHINSFNRG
>Mature_270_residues
MNSSSNFCSFRRSALFGWAVFINFVCFQKLDNQTYMQSVLSYHKITSRVDFGICTRTPKDFRKDVEFIAALPSEKRPIVS
FDDGYTDTYEAAFPILSEYGLTGQVFVITDAIGKPNSWDANFFGEFQHIELSQVRELAQAGWEIGSHTKTHRALTVLSLS
ALREELETSKWFLEDAIGQPVTSISFPFGKFNEQVLQVCREVGYERAISISRRSQDGFVERSLAVYRFDRRAHLKAKLNK
NKLELWRLQTINAFSTLTVLMHHINSFNRG

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 31011; Mature: 31011

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSSNFCSFRRSALFGWAVFINFVCFQKLDNQTYMQSVLSYHKITSRVDFGICTRTPKD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
FRKDVEFIAALPSEKRPIVSFDDGYTDTYEAAFPILSEYGLTGQVFVITDAIGKPNSWDA
HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
NFFGEFQHIELSQVRELAQAGWEIGSHTKTHRALTVLSLSALREELETSKWFLEDAIGQP
CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VTSISFPFGKFNEQVLQVCREVGYERAISISRRSQDGFVERSLAVYRFDRRAHLKAKLNK
HHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCC
NKLELWRLQTINAFSTLTVLMHHINSFNRG
CCEEEEEEHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSSSNFCSFRRSALFGWAVFINFVCFQKLDNQTYMQSVLSYHKITSRVDFGICTRTPKD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
FRKDVEFIAALPSEKRPIVSFDDGYTDTYEAAFPILSEYGLTGQVFVITDAIGKPNSWDA
HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
NFFGEFQHIELSQVRELAQAGWEIGSHTKTHRALTVLSLSALREELETSKWFLEDAIGQP
CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VTSISFPFGKFNEQVLQVCREVGYERAISISRRSQDGFVERSLAVYRFDRRAHLKAKLNK
HHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCC
NKLELWRLQTINAFSTLTVLMHHINSFNRG
CCEEEEEEHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]