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The map label for this gene is rbpE [H]

Identifier: 193213871

GI number: 193213871

Start: 179963

End: 180229

Strand: Direct

Name: rbpE [H]

Synonym: Ctha_0152

Alternate gene names: 193213871

Gene position: 179963-180229 (Clockwise)

Preceding gene: 193213870

Following gene: 193213877

Centisome position: 5.46

GC content: 41.95

Gene sequence:

>267_bases
ATGCGAAAGACTATCTACGTGGCAAATTTGCCATTCGGCACTTCGGAAGATGAAGTGCGTGAATTATTTGAACAACATGG
AACTGTTCATTCTGTTAAGTTTATTATGGATCGCGAGACTGGAAAATTTCGTGGATTTGGTTTTGTTGAGATGGATGAAG
ATGAAGCCATCCCTGCAATCGATGCCTTAAATGGCCTTAGCTTTGGCGGAAGAAATCTACAAGTCAACGAAGCGCGCGAA
CGTAAACCCAAAAGTAAGCGCTTTTAA

Upstream 100 bases:

>100_bases
AGAACTTACTTTGTTTCCGATTTATTTTTATCGTGAGCAAGTATTGTTCAACTCAGAACAGGGCTGTTTCCAAAATGTTA
ATTCGTTTTTAATCAGAAAG

Downstream 100 bases:

>100_bases
ATAAAATGAAATATCAGATTTGATATTTCATTTTCAGTTCTCGGCATCTTTATTAAAAAAAACAGAGAGAAGTTTTTTGT
CAAGCTTCTCTTAAGGTTTA

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MRKTIYVANLPFGTSEDEVRELFEQHGTVHSVKFIMDRETGKFRGFGFVEMDEDEAIPAIDALNGLSFGGRNLQVNEARE
RKPKSKRF

Sequences:

>Translated_88_residues
MRKTIYVANLPFGTSEDEVRELFEQHGTVHSVKFIMDRETGKFRGFGFVEMDEDEAIPAIDALNGLSFGGRNLQVNEARE
RKPKSKRF
>Mature_88_residues
MRKTIYVANLPFGTSEDEVRELFEQHGTVHSVKFIMDRETGKFRGFGFVEMDEDEAIPAIDALNGLSFGGRNLQVNEARE
RKPKSKRF

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=85, Percent_Identity=37.6470588235294, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI4557493, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=47.5, Blast_Score=78, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=46.0526315789474, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=43.421052631579, Blast_Score=68, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17553656, Length=78, Percent_Identity=42.3076923076923, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17137710, Length=83, Percent_Identity=39.7590361445783, Blast_Score=73, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24582417, Length=78, Percent_Identity=38.4615384615385, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45550943, Length=78, Percent_Identity=38.4615384615385, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582419, Length=78, Percent_Identity=38.4615384615385, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582423, Length=78, Percent_Identity=38.4615384615385, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582421, Length=78, Percent_Identity=38.4615384615385, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161077787, Length=73, Percent_Identity=49.3150684931507, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18860091, Length=73, Percent_Identity=49.3150684931507, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19920866, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582412, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10094; Mature: 10094

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTIYVANLPFGTSEDEVRELFEQHGTVHSVKFIMDRETGKFRGFGFVEMDEDEAIPAI
CCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCH
DALNGLSFGGRNLQVNEARERKPKSKRF
HHCCCCCCCCCCEEECCHHHCCCCCCCC
>Mature Secondary Structure
MRKTIYVANLPFGTSEDEVRELFEQHGTVHSVKFIMDRETGKFRGFGFVEMDEDEAIPAI
CCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCH
DALNGLSFGGRNLQVNEARERKPKSKRF
HHCCCCCCCCCCEEECCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]