| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291573
Identifier: 192291573
GI number: 192291573
Start: 3447735
End: 3448694
Strand: Reverse
Name: 192291573
Synonym: Rpal_3200
Alternate gene names: NA
Gene position: 3448694-3447735 (Counterclockwise)
Preceding gene: 192291574
Following gene: 192291572
Centisome position: 60.04
GC content: 62.19
Gene sequence:
>960_bases ATGGCCACCAAGATCACCATCAACGTCACGAACAACAGCACTTCGACCCAGAATTTCTTCTTCTTCCAGCAGCCGGCCGT CTATTCCGGCGGCCCCAAGGTCTACACCAACAGCCTCTACAGTCAGACGCTGCTGCCGTATGCGACCTCGGGGTCGGTGC TGAGCTTCACGATGATCCTGCAGTACTATGCTGGCGTTCAGCAGCAGGTGGACCCGCCGCAGATCGGGCAGCCGTCCGGC CAGCTCGGCGCGATTCAGCCGATCGAGCTCACGCCTGCGTCGGGCGGTACGCCCACCAAGAACACCACTAACATGACGGT TGATCCGTCGCTGGGCTTGTCCGTACCGGTCTCGACGGATGGCCCGCAGGCCGGCTCGTTCCGGATCGTGACGCCGGTGT ACGATCCGGTGCTGATGAATTACAGCGCGGGCTCGGCGGTGCAGTCGCTGACGGGAGCCATCACGCTGTCGAACTTCGTC ACCGCTCAACCCAACACCAATCTGGACTGCCAACCGATCATCAAGTTCTACGTCCAGACCGGCACCTACACCGCCGGAAC GGTGATGAATTTCACCTCGTCGTCGGTGGGGGCGGCGCTTTGCGACGCCACCCCCGGCTTCACCACGTTCAACGTCAGCT ACAACCCCAACGGCACCTGGACGGTGAAGAACATGGCGTTGTCTCAGCTCGCCAACGGCAGCCGCGGTCTGCTGGAGAAG TCATCCTTCACGACCGAGCTGAACGCGACGGCCCAGATTGCCGAGGTTCTCAACGAGGCAGGTACGGCAGTTGTGTCCAC GGGCCTGGCGGCGAACTTCTTGCGCCCCGTCACCGTGACCAACCTCACTGCGCCGGGTGCCATCATTCGGAATCGCGACT ACCAGGTCGGGCCGGTCGGTGGCCGGTATCAGGGTTTGACCTGTACTGACGTCGCCGGAAATACCGCGGTTTTCGACTGA
Upstream 100 bases:
>100_bases GTTGCATTCTGAGGCGGTTGCCTGCGTTACGGTTGTGCAACCCTTGGTTGTGTTTACTCCGAGGGTTCAACCGCACCCCG TAGCCCGCCAGGAGACCATC
Downstream 100 bases:
>100_bases GATCGAGCTAAGCTCTTGGTAAGGTAAAGCCCCCGAACCGGCGGTTCTGCTAATCGGCCGGAGGCCATGCTGCCTCCGGC CATTCGCGTTGACAGAAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MATKITINVTNNSTSTQNFFFFQQPAVYSGGPKVYTNSLYSQTLLPYATSGSVLSFTMILQYYAGVQQQVDPPQIGQPSG QLGAIQPIELTPASGGTPTKNTTNMTVDPSLGLSVPVSTDGPQAGSFRIVTPVYDPVLMNYSAGSAVQSLTGAITLSNFV TAQPNTNLDCQPIIKFYVQTGTYTAGTVMNFTSSSVGAALCDATPGFTTFNVSYNPNGTWTVKNMALSQLANGSRGLLEK SSFTTELNATAQIAEVLNEAGTAVVSTGLAANFLRPVTVTNLTAPGAIIRNRDYQVGPVGGRYQGLTCTDVAGNTAVFD
Sequences:
>Translated_319_residues MATKITINVTNNSTSTQNFFFFQQPAVYSGGPKVYTNSLYSQTLLPYATSGSVLSFTMILQYYAGVQQQVDPPQIGQPSG QLGAIQPIELTPASGGTPTKNTTNMTVDPSLGLSVPVSTDGPQAGSFRIVTPVYDPVLMNYSAGSAVQSLTGAITLSNFV TAQPNTNLDCQPIIKFYVQTGTYTAGTVMNFTSSSVGAALCDATPGFTTFNVSYNPNGTWTVKNMALSQLANGSRGLLEK SSFTTELNATAQIAEVLNEAGTAVVSTGLAANFLRPVTVTNLTAPGAIIRNRDYQVGPVGGRYQGLTCTDVAGNTAVFD >Mature_318_residues ATKITINVTNNSTSTQNFFFFQQPAVYSGGPKVYTNSLYSQTLLPYATSGSVLSFTMILQYYAGVQQQVDPPQIGQPSGQ LGAIQPIELTPASGGTPTKNTTNMTVDPSLGLSVPVSTDGPQAGSFRIVTPVYDPVLMNYSAGSAVQSLTGAITLSNFVT AQPNTNLDCQPIIKFYVQTGTYTAGTVMNFTSSSVGAALCDATPGFTTFNVSYNPNGTWTVKNMALSQLANGSRGLLEKS SFTTELNATAQIAEVLNEAGTAVVSTGLAANFLRPVTVTNLTAPGAIIRNRDYQVGPVGGRYQGLTCTDVAGNTAVFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33430; Mature: 33299
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATKITINVTNNSTSTQNFFFFQQPAVYSGGPKVYTNSLYSQTLLPYATSGSVLSFTMIL CCEEEEEEEECCCCCCCEEEEEECCCEECCCCCEEECCHHHHHHCCEECCCCHHHHHHHH QYYAGVQQQVDPPQIGQPSGQLGAIQPIELTPASGGTPTKNTTNMTVDPSLGLSVPVSTD HHHHCHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEECCC GPQAGSFRIVTPVYDPVLMNYSAGSAVQSLTGAITLSNFVTAQPNTNLDCQPIIKFYVQT CCCCCCEEEECCCCCCEEEECCCCHHHHHHHHEEEEEEEEEECCCCCCCHHHEEEEEEEC GTYTAGTVMNFTSSSVGAALCDATPGFTTFNVSYNPNGTWTVKNMALSQLANGSRGLLEK CCEECCEEEEECCCCCCEEEECCCCCCEEEEEEECCCCCEEEHHHHHHHHCCCCCCCEEC SSFTTELNATAQIAEVLNEAGTAVVSTGLAANFLRPVTVTNLTAPGAIIRNRDYQVGPVG CCCCEECCCHHHHHHHHHHCCCEEEECCHHHHHCCCEEEEECCCCCCEEECCCEEECCCC GRYQGLTCTDVAGNTAVFD CCCCCEEEECCCCCCEECC >Mature Secondary Structure ATKITINVTNNSTSTQNFFFFQQPAVYSGGPKVYTNSLYSQTLLPYATSGSVLSFTMIL CEEEEEEEECCCCCCCEEEEEECCCEECCCCCEEECCHHHHHHCCEECCCCHHHHHHHH QYYAGVQQQVDPPQIGQPSGQLGAIQPIELTPASGGTPTKNTTNMTVDPSLGLSVPVSTD HHHHCHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEECCC GPQAGSFRIVTPVYDPVLMNYSAGSAVQSLTGAITLSNFVTAQPNTNLDCQPIIKFYVQT CCCCCCEEEECCCCCCEEEECCCCHHHHHHHHEEEEEEEEEECCCCCCCHHHEEEEEEEC GTYTAGTVMNFTSSSVGAALCDATPGFTTFNVSYNPNGTWTVKNMALSQLANGSRGLLEK CCEECCEEEEECCCCCCEEEECCCCCCEEEEEEECCCCCEEEHHHHHHHHCCCCCCCEEC SSFTTELNATAQIAEVLNEAGTAVVSTGLAANFLRPVTVTNLTAPGAIIRNRDYQVGPVG CCCCEECCCHHHHHHHHHHCCCEEEECCHHHHHCCCEEEEECCCCCCEEECCCEEECCCC GRYQGLTCTDVAGNTAVFD CCCCCEEEECCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA