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The map label for this gene is yggS [C]

Identifier: 192291510

GI number: 192291510

Start: 3380410

End: 3381198

Strand: Reverse

Name: yggS [C]

Synonym: Rpal_3134

Alternate gene names: 192291510

Gene position: 3381198-3380410 (Counterclockwise)

Preceding gene: 192291511

Following gene: 192291503

Centisome position: 58.86

GC content: 63.5

Gene sequence:

>789_bases
ATGCCTGCCAGTCCCGACCTCTTGCCGGACGAGATCGCCCGTTTCGGCACTGATCCCGCCGCGGCCTTTGCGGCGAACCT
GACGTCGGTTCAGGAGCGGATCGCGGCCGCTTGCCATCGCTGCGGGCGAAGCGCCGGTGAGGTGCGTCTTTTGCCTGTCA
CGAAGACAGTGCCGGCCGGTGTGCTTCGCCGGGCCTATGCGGCCGGGATCTCAGAATTTAGCGAAAACAAGCTACAGGAG
GCCCGCGACAAGCGCGACATCCTGGCGGATCTGCCGATCCGCTGGTCGATCATCGGCCACCTTCAGACCAACAAGGTGAA
GTACCTCGTTCGGTTTGCGGCTGAATTCCATGCACTCGACAGTCTGCGGCTCGCCGATGAACTCAATCGTCGGCTGGATG
CGGAGGGACGCGATCTCGACGTGTTCGTGCAGGTCAACACCTCGGGCGAGGCGAGCAAGTACGGTCTTGCTCCCTGTGAC
CTCGTTCCCTTCATCGAGCGTCTGTCCGACTATCCGCGGCTCAAGCCGCGCGGTCTGATGACGCTGGCAATCTTCAGTGC
CGAGACCGAACGCGTCCGCGGCTGCTTCCGGCTGCTGCGGGATCTGCGTGATCGCGCGATACGCGTTCATCCCGACCTGA
CCGAATTGTCGATGGGCATGTCGGGTGATTTCGAGTTCGCGATCGAGGAGGGGGCGACCGTGGTGCGGGTCGGACAGGCG
ATCTTTGGCGCACGGCCGACCACCGACAGGTTCTACTGGCCACACGCAAGCGTCGACCGAGGATCCTGA

Upstream 100 bases:

>100_bases
CCGGGACGCTGGATGCAGAGCGGCAAGCGATCAACAAGCGCGTTCGGCGACTGGCCGCGAGCTTTCCGCTCCCTTACTGA
TCAGGAGTATTCGTGTCACG

Downstream 100 bases:

>100_bases
AGACCAATCTGTCAGGGCTACTCGTCGTTGCTGGGCTGCGGCCCGCCGTGCGGGCCGTGGTCCTCAATCCGGCCCTCGGC
GGTGTCGCGGAATAGGGCGG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MPASPDLLPDEIARFGTDPAAAFAANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLRRAYAAGISEFSENKLQE
ARDKRDILADLPIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLADELNRRLDAEGRDLDVFVQVNTSGEASKYGLAPCD
LVPFIERLSDYPRLKPRGLMTLAIFSAETERVRGCFRLLRDLRDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQA
IFGARPTTDRFYWPHASVDRGS

Sequences:

>Translated_262_residues
MPASPDLLPDEIARFGTDPAAAFAANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLRRAYAAGISEFSENKLQE
ARDKRDILADLPIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLADELNRRLDAEGRDLDVFVQVNTSGEASKYGLAPCD
LVPFIERLSDYPRLKPRGLMTLAIFSAETERVRGCFRLLRDLRDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQA
IFGARPTTDRFYWPHASVDRGS
>Mature_261_residues
PASPDLLPDEIARFGTDPAAAFAANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLRRAYAAGISEFSENKLQEA
RDKRDILADLPIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLADELNRRLDAEGRDLDVFVQVNTSGEASKYGLAPCDL
VPFIERLSDYPRLKPRGLMTLAIFSAETERVRGCFRLLRDLRDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQAI
FGARPTTDRFYWPHASVDRGS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=244, Percent_Identity=38.9344262295082, Blast_Score=138, Evalue=4e-33,
Organism=Escherichia coli, GI1789321, Length=238, Percent_Identity=39.9159663865546, Blast_Score=145, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=34.8623853211009, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=246, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=6e-23,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=37.5586854460094, Blast_Score=112, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 29098; Mature: 28966

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASPDLLPDEIARFGTDPAAAFAANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAG
CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
VLRRAYAAGISEFSENKLQEARDKRDILADLPIRWSIIGHLQTNKVKYLVRFAAEFHALD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
SLRLADELNRRLDAEGRDLDVFVQVNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLM
HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEE
TLAIFSAETERVRGCFRLLRDLRDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQA
EEEEECCCHHHHHHHHHHHHHHHHCEEEECCCHHHHHCCCCCCEEEEECCCCEEEEHHHH
IFGARPTTDRFYWPHASVDRGS
HHCCCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
PASPDLLPDEIARFGTDPAAAFAANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAG
CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
VLRRAYAAGISEFSENKLQEARDKRDILADLPIRWSIIGHLQTNKVKYLVRFAAEFHALD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
SLRLADELNRRLDAEGRDLDVFVQVNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLM
HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEE
TLAIFSAETERVRGCFRLLRDLRDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQA
EEEEECCCHHHHHHHHHHHHHHHHCEEEECCCHHHHHCCCCCCEEEEECCCCEEEEHHHH
IFGARPTTDRFYWPHASVDRGS
HHCCCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]