Click here to switch to the map view.

The map label for this gene is 192291474

Identifier: 192291474

GI number: 192291474

Start: 3343003

End: 3343680

Strand: Reverse

Name: 192291474

Synonym: Rpal_3098

Alternate gene names: NA

Gene position: 3343680-3343003 (Counterclockwise)

Preceding gene: 192291475

Following gene: 192291472

Centisome position: 58.21

GC content: 65.04

Gene sequence:

>678_bases
ATGACGCTATCGACGAGCACTCTGGAATCCCGGCGGCGCGGGCTGGTGACAGCCGCGCACGCCTTGATCCGCGAATCCGG
CGGTGCCGGGTTTTCGATGATTCAGCTTGCCAAGCGTGCGGGAGTGAGCCCGGCGACGCCCTACAATCTGGTCGGGACAA
AGGCCGACTTGTTGCGGCTCGTCGTCCGCGACGAGTTCGCCGCGTTCGAAACCCGCCTCGCCACCCGGCCTCCGGGATCG
CCGCTCGCGCAGCTCGAGGCGGCAATTGATCTGGTGGTGAAGCACTATTGCGCAGAACCGGCGTTCTATCGCGGTCTCTA
CGCTGCGATGCAGGGCGAGCACGCTGCCGAACTCCGCGGCATGATGCTCGCCGAAGGGCAGCAATTGTGGTGCGCGATGG
TGCGCGCCGCAGTGGACGCTGGTGAAATCGAGCGCGTCGTCGACGATGAAGCCTTCACCGAGGTGATGCTGCGCGCCATG
GCCTCAACCACGGATGCCTGGCTGGCCGTGAACTGGAGCAGGAAGCGCTTCGCCCAGGAGATGCATTTGGCGACGCGCCT
GCTGCTACTCGGCGTCGTCACCAAAACGGCTCGCAGCCGGATTGTTGCTGAATTCCCATCATCACGTCGAACCGGTGCGC
GAAAGCGTGCGCGAGCGAGCGGGACTGCCAAGCCGTAG

Upstream 100 bases:

>100_bases
GTGCATCCGGTCACGGTGGCGATGCTCGGTCAGGTTCAGGAAGGCAGCAACGACGTGTTGATCCCCTACTACGAGAACAT
CCCCGCAGATACGGCCTGAG

Downstream 100 bases:

>100_bases
TCGGCCGCAGCCACTATGCCGACGGGAATAGCTCAGACGGGACCGCCAGTCGCCCGGCAGCGCCGCGACCGAGCGCGGTT
CGATCCTCGCGCGTCGCGGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Regulatory Protein TetR

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTLSTSTLESRRRGLVTAAHALIRESGGAGFSMIQLAKRAGVSPATPYNLVGTKADLLRLVVRDEFAAFETRLATRPPGS
PLAQLEAAIDLVVKHYCAEPAFYRGLYAAMQGEHAAELRGMMLAEGQQLWCAMVRAAVDAGEIERVVDDEAFTEVMLRAM
ASTTDAWLAVNWSRKRFAQEMHLATRLLLLGVVTKTARSRIVAEFPSSRRTGARKRARASGTAKP

Sequences:

>Translated_225_residues
MTLSTSTLESRRRGLVTAAHALIRESGGAGFSMIQLAKRAGVSPATPYNLVGTKADLLRLVVRDEFAAFETRLATRPPGS
PLAQLEAAIDLVVKHYCAEPAFYRGLYAAMQGEHAAELRGMMLAEGQQLWCAMVRAAVDAGEIERVVDDEAFTEVMLRAM
ASTTDAWLAVNWSRKRFAQEMHLATRLLLLGVVTKTARSRIVAEFPSSRRTGARKRARASGTAKP
>Mature_224_residues
TLSTSTLESRRRGLVTAAHALIRESGGAGFSMIQLAKRAGVSPATPYNLVGTKADLLRLVVRDEFAAFETRLATRPPGSP
LAQLEAAIDLVVKHYCAEPAFYRGLYAAMQGEHAAELRGMMLAEGQQLWCAMVRAAVDAGEIERVVDDEAFTEVMLRAMA
STTDAWLAVNWSRKRFAQEMHLATRLLLLGVVTKTARSRIVAEFPSSRRTGARKRARASGTAKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24532; Mature: 24400

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSTSTLESRRRGLVTAAHALIRESGGAGFSMIQLAKRAGVSPATPYNLVGTKADLLRL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHH
VVRDEFAAFETRLATRPPGSPLAQLEAAIDLVVKHYCAEPAFYRGLYAAMQGEHAAELRG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
MMLAEGQQLWCAMVRAAVDAGEIERVVDDEAFTEVMLRAMASTTDAWLAVNWSRKRFAQE
HHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
MHLATRLLLLGVVTKTARSRIVAEFPSSRRTGARKRARASGTAKP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLSTSTLESRRRGLVTAAHALIRESGGAGFSMIQLAKRAGVSPATPYNLVGTKADLLRL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHH
VVRDEFAAFETRLATRPPGSPLAQLEAAIDLVVKHYCAEPAFYRGLYAAMQGEHAAELRG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
MMLAEGQQLWCAMVRAAVDAGEIERVVDDEAFTEVMLRAMASTTDAWLAVNWSRKRFAQE
HHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
MHLATRLLLLGVVTKTARSRIVAEFPSSRRTGARKRARASGTAKP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA