| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is wcaJ [H]
Identifier: 192291465
GI number: 192291465
Start: 3331756
End: 3333312
Strand: Reverse
Name: wcaJ [H]
Synonym: Rpal_3089
Alternate gene names: 192291465
Gene position: 3333312-3331756 (Counterclockwise)
Preceding gene: 192291466
Following gene: 192291462
Centisome position: 58.03
GC content: 64.8
Gene sequence:
>1557_bases ATGGAGCCGATCAGCGCACGTTCGATGATCAGTGCTGCTGCGACGGAAGCCGTGGTCGCCAGCGGCGACGGCGCGCCGCG GGTGGAACGCCGCAAGCGGTTGTCGCCGGCCGCCCTCGCCGTCGCCAATCAGAAGGTGCCGCCGGCGTTTTCGCCGATCG TGATCGCCGGCTCCGTCCGCCTCGCCGATTTTCTCGTGATCGCCGCCGTCGGCATCGCGCTGTACTTCGCGCTCGTGGTC CGCCGCGACGGCTTTGCCTGGGAGTACATCGCGGCGATCATCGGCACCACGGCGACTGCGGTCGTCGCGTTCCAGGCTGC CGATCTTTACAAGGTGCAACTGTTCCGCGGCACCTTGAAACAGATGACCCGGATCATATCGACGTGGTCGATCGTGTTCC TGCTGTTCATCGGCGCATCGTTCTTCGCCAAGCTCGGCGGCGAGGTGTCGCGGCTGTGGCTGGGTTCGTTCTTTTTCGCC GGCCTCGCCTTGCTGATCATCGAGCGATTGTCGGTGCGCGCGCTGGTGCGGCGCTGGGCGTCGCAAGGCCGGCTCGACCG CCGCACCGTGATCGTCGGTGCCGACGCTAATGGCGCCAAGCTGATCGAAGCGCTGAAGGCCGAGCACGCCGACGCCTCCG ACATCCGTATCCTCGGCGTGTTCGACGACCGCAACGACGCCCGCTCGCAGTCCACTTGCGCGGGCGTTCCGAAGCTCGGC AAGGTCGATGACATTCCCGAATTCGCCCGCCGCACCCGTGTCGATCTCGTGCTGTTCGCGCTGCCGATCTCGGCCGAGAC CCGCATCCTCGACATGCTGAAGAAGCTGTGGGTGCTGCCGGTTGACATCCGGCTGTCGGCGCACACCAACAAGCTGCGGT TCCGGCCGCGCGCCTATTCCTATGTCGGCAAGGTGCCGACGCTCGACGTGTTCGAAGCGCCGATCACCGATTGGGATCAG GTGATCAAGCAGGTATTCGACCGCGTCGTCGGCGGTTTCATCCTGCTGCTCGCCGCCCCGGTAATGGCTTTGGTAGCGCT GGCGATCAAGCTCGACAGCCCGGGTCCTGTGCTGTTCCGGCAGAAGCGGTTCGGCTTCAACAACGAGCGCATCGACGTGC TCAAGTTTCGGTCGATGTATCACGACCAGGCCGATCCCACTGCGTCAAAGGTCGTCACCCGCAACGACCCGCGCGTCACC CGGGTCGGCCGCTTCATCCGCCGCACCAGCCTCGACGAGCTGCCGCAACTGTTCAACGTGGTGTTCAAGGGCAATCTGTC GCTGGTCGGCCCGCGCCCGCATGCGGTGCAGGGCAAGCTGCAGAGCCAGCTGTTCGACGAAGCCGTCGACGGCTACTTCG CCCGCCACCGCGTCAAGCCGGGTATCACCGGCTGGGCCCAGATCAACGGCTGGCGCGGCGAGATCGACAACGAAGAGAAG ATCCAGAAGCGCGTCGAGTTCGACCTGTACTACATCGAGAACTGGTCGGTCCTGTTTGACCTCTACATTCTGCTGAGAAC TCCGTGGGCGCTGCTCAAGGGCGAGAACGCGTACTGA
Upstream 100 bases:
>100_bases TCGCCGCTAACCGTTTCTTGCGACTTTTCCGTTAATGCCCGGACTGGGGGAGTTCGCCGGACGACAAAGTCGTGCCGGCG CAACAGACGGACATGGACAG
Downstream 100 bases:
>100_bases GGCGTTCGTTTTAAGCACTTTCCCCACACCGTCATTCCGGGGCGCCGCGCAGCGGCGAACCCGGAATCCCGAGATTGTGG AAACGCCGTGCCTCACCACA
Product: undecaprenyl-phosphate glucose phosphotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MEPISARSMISAAATEAVVASGDGAPRVERRKRLSPAALAVANQKVPPAFSPIVIAGSVRLADFLVIAAVGIALYFALVV RRDGFAWEYIAAIIGTTATAVVAFQAADLYKVQLFRGTLKQMTRIISTWSIVFLLFIGASFFAKLGGEVSRLWLGSFFFA GLALLIIERLSVRALVRRWASQGRLDRRTVIVGADANGAKLIEALKAEHADASDIRILGVFDDRNDARSQSTCAGVPKLG KVDDIPEFARRTRVDLVLFALPISAETRILDMLKKLWVLPVDIRLSAHTNKLRFRPRAYSYVGKVPTLDVFEAPITDWDQ VIKQVFDRVVGGFILLLAAPVMALVALAIKLDSPGPVLFRQKRFGFNNERIDVLKFRSMYHDQADPTASKVVTRNDPRVT RVGRFIRRTSLDELPQLFNVVFKGNLSLVGPRPHAVQGKLQSQLFDEAVDGYFARHRVKPGITGWAQINGWRGEIDNEEK IQKRVEFDLYYIENWSVLFDLYILLRTPWALLKGENAY
Sequences:
>Translated_518_residues MEPISARSMISAAATEAVVASGDGAPRVERRKRLSPAALAVANQKVPPAFSPIVIAGSVRLADFLVIAAVGIALYFALVV RRDGFAWEYIAAIIGTTATAVVAFQAADLYKVQLFRGTLKQMTRIISTWSIVFLLFIGASFFAKLGGEVSRLWLGSFFFA GLALLIIERLSVRALVRRWASQGRLDRRTVIVGADANGAKLIEALKAEHADASDIRILGVFDDRNDARSQSTCAGVPKLG KVDDIPEFARRTRVDLVLFALPISAETRILDMLKKLWVLPVDIRLSAHTNKLRFRPRAYSYVGKVPTLDVFEAPITDWDQ VIKQVFDRVVGGFILLLAAPVMALVALAIKLDSPGPVLFRQKRFGFNNERIDVLKFRSMYHDQADPTASKVVTRNDPRVT RVGRFIRRTSLDELPQLFNVVFKGNLSLVGPRPHAVQGKLQSQLFDEAVDGYFARHRVKPGITGWAQINGWRGEIDNEEK IQKRVEFDLYYIENWSVLFDLYILLRTPWALLKGENAY >Mature_518_residues MEPISARSMISAAATEAVVASGDGAPRVERRKRLSPAALAVANQKVPPAFSPIVIAGSVRLADFLVIAAVGIALYFALVV RRDGFAWEYIAAIIGTTATAVVAFQAADLYKVQLFRGTLKQMTRIISTWSIVFLLFIGASFFAKLGGEVSRLWLGSFFFA GLALLIIERLSVRALVRRWASQGRLDRRTVIVGADANGAKLIEALKAEHADASDIRILGVFDDRNDARSQSTCAGVPKLG KVDDIPEFARRTRVDLVLFALPISAETRILDMLKKLWVLPVDIRLSAHTNKLRFRPRAYSYVGKVPTLDVFEAPITDWDQ VIKQVFDRVVGGFILLLAAPVMALVALAIKLDSPGPVLFRQKRFGFNNERIDVLKFRSMYHDQADPTASKVVTRNDPRVT RVGRFIRRTSLDELPQLFNVVFKGNLSLVGPRPHAVQGKLQSQLFDEAVDGYFARHRVKPGITGWAQINGWRGEIDNEEK IQKRVEFDLYYIENWSVLFDLYILLRTPWALLKGENAY
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG2148
COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial sugar transferase family [H]
Homologues:
Organism=Escherichia coli, GI1788360, Length=460, Percent_Identity=33.0434782608696, Blast_Score=238, Evalue=7e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003362 - InterPro: IPR017475 - InterPro: IPR017473 [H]
Pfam domain/function: PF02397 Bac_transf [H]
EC number: NA
Molecular weight: Translated: 57767; Mature: 57767
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPISARSMISAAATEAVVASGDGAPRVERRKRLSPAALAVANQKVPPAFSPIVIAGSVR CCCCCHHHHHHHHHHHHHEECCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCHH LADFLVIAAVGIALYFALVVRRDGFAWEYIAAIIGTTATAVVAFQAADLYKVQLFRGTLK HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH QMTRIISTWSIVFLLFIGASFFAKLGGEVSRLWLGSFFFAGLALLIIERLSVRALVRRWA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQGRLDRRTVIVGADANGAKLIEALKAEHADASDIRILGVFDDRNDARSQSTCAGVPKLG HCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHCCCCCCC KVDDIPEFARRTRVDLVLFALPISAETRILDMLKKLWVLPVDIRLSAHTNKLRFRPRAYS CCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHEECEEEEEECCCCCEEECCHHHH YVGKVPTLDVFEAPITDWDQVIKQVFDRVVGGFILLLAAPVMALVALAIKLDSPGPVLFR HHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE QKRFGFNNERIDVLKFRSMYHDQADPTASKVVTRNDPRVTRVGRFIRRTSLDELPQLFNV HHHCCCCCCCCHHHHHHHHHCCCCCCCHHHCEECCCCCHHHHHHHHHHCCHHHHHHHHHH VFKGNLSLVGPRPHAVQGKLQSQLFDEAVDGYFARHRVKPGITGWAQINGWRGEIDNEEK HHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH IQKRVEFDLYYIENWSVLFDLYILLRTPWALLKGENAY HHHHHHEEEEEEECHHHHHHHHHHHHCCHHHHCCCCCC >Mature Secondary Structure MEPISARSMISAAATEAVVASGDGAPRVERRKRLSPAALAVANQKVPPAFSPIVIAGSVR CCCCCHHHHHHHHHHHHHEECCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCHH LADFLVIAAVGIALYFALVVRRDGFAWEYIAAIIGTTATAVVAFQAADLYKVQLFRGTLK HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH QMTRIISTWSIVFLLFIGASFFAKLGGEVSRLWLGSFFFAGLALLIIERLSVRALVRRWA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQGRLDRRTVIVGADANGAKLIEALKAEHADASDIRILGVFDDRNDARSQSTCAGVPKLG HCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHCCCCCCC KVDDIPEFARRTRVDLVLFALPISAETRILDMLKKLWVLPVDIRLSAHTNKLRFRPRAYS CCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHEECEEEEEECCCCCEEECCHHHH YVGKVPTLDVFEAPITDWDQVIKQVFDRVVGGFILLLAAPVMALVALAIKLDSPGPVLFR HHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE QKRFGFNNERIDVLKFRSMYHDQADPTASKVVTRNDPRVTRVGRFIRRTSLDELPQLFNV HHHCCCCCCCCHHHHHHHHHCCCCCCCHHHCEECCCCCHHHHHHHHHHCCHHHHHHHHHH VFKGNLSLVGPRPHAVQGKLQSQLFDEAVDGYFARHRVKPGITGWAQINGWRGEIDNEEK HHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH IQKRVEFDLYYIENWSVLFDLYILLRTPWALLKGENAY HHHHHHEEEEEEECHHHHHHHHHHHHCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8759852; 9097040; 9278503 [H]