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The map label for this gene is ydiD [C]

Identifier: 192291318

GI number: 192291318

Start: 3212322

End: 3213857

Strand: Reverse

Name: ydiD [C]

Synonym: Rpal_2940

Alternate gene names: 192291318

Gene position: 3213857-3212322 (Counterclockwise)

Preceding gene: 192291319

Following gene: 192291317

Centisome position: 55.95

GC content: 69.14

Gene sequence:

>1536_bases
GTGAGCCCGCCCAACACCTCGCCGACGCTCGACGGACTGTTTCGCCGCACCCTCGCCCGTCAGCCGGATGCGATCGCGTT
GATCGATCCGCCGGACAAGCAGCGCATCACCGGGCAACCGCCGCGGCGCATGACCTACGCCGAGGCCGACCGCGCGATCT
CGGCGCTGGCCGCGCATTTCGTCACCGCCGGTCTGCCGAGCAATTCGGTGATCGCGGTGCAACTGCCGAACACCATCGAA
TTTCCGCTCACGGTCCTGGCGGCGCATCGCGCCGGCCTCGTCGTGGCGTTGCTGCCGCAGCTCTGGCGCCACGCCGATCT
CACCGCTGCGCTGAACCGCACCGGCGCGCGGGCGATCGTGTCGACGCGCTGGATCGACGGCGTCAGCCACTCTGATCTGG
CCATGAATGCCGCGGCGGAAGCATTCTCGATCCGTCACGTTTGCGGTTTCGGCGACGACCTGCCGGAGGGCATGGCCTCG
CTCGACGCCGCGATGGAAGACCCCACCGCATTGCCGCCGGCGCCGGGACCGCAGGAAGCCCGCCGCGCTGCGGTGATCTC
GTTCGACACCACCGGCGACGGCGTCCGTGCGATCCCGCGCAGCCATCTGCATCTGATCGCGGGCGGCCTGGTAGTGTTCC
TGGAAAGCGCGATTCCGCAGGGCGCGGTGATGCTGTCGGCACAGACGCCGGCGACGTTCGCGGGGCTCGCCTCGTCGATG
GTGACGTGGCTGCTCAGCGGCGGCACGCTGGCGCTGCATCATCCCTTCGATGACGCGGTACTGGAGCGGCAGATCGTCGA
CCTCGGCTGTCAGGCCCTGGTCGCACCGGCCCCCCTTGCTCTCCGCCTCGGCGAAGCTGGACTCACCGCGCAGGCTCCGT
CGCTGCGCAGCGTGGTGGGCCTATGGCGGGCGCCCGAGCAGGTCGCCTCCAGCCCGAACTGGATCGGCGCGCCGGTACAC
TTCACCGATATCTACCTGTTCGGCGAAGCCGGATTGTTCGGCGCCCAGCGTGCAGCGGACGGTACGCCGGCGGCCGTCAT
GCCGGGACCGCACACGGCGCCCCGTGATCATGCCGGCGGTTCGACGGCAGGCGAAATCCTGATTACGCCGAAAGGCACGC
TCGGGCTGCGCGGGCCGATGGTAACGCTTGCCGCCTATGCGCCGCTGCCGCCACTCAACAGCTCGATCCCGATGGCGCCA
CCGCCGGACTTCGTGGACACCGGCTATGCGGCCCGGCTCGACCGAGCCACCGGTGCGGTGTGCATCACCGCTCCACCCGC
CGGGGTGATGGCGGTCGGCGGCTATCGCTTTCTCGCCCAGGACCTGCAGGAATGGGCAAAGCGGCTCGGCCAGGGCGCGC
TGCTCACGGCGCTGCCGGACCGGCTCAGCGGCTACCGCCTTGCAGGACGCGCACAGGACAATTCCAGAGCTCGTGAAGCA
CTTGCAGAACTCGGCCTAAACCCTTTGATGGTCGAGGCCTTCCGCGACGCTCCGAAGGTCGATGAAAACCGCGCATCGAC
GTTGACGCCGCATTAA

Upstream 100 bases:

>100_bases
AATCGTTTAGAACGTCCAAAGGCCACTGCCCTGACGGGTTATCTTCCCGAAACATGGTGGTATCGGCCGCCGCCGCAGCA
ACCGCCGCAGAGGTGATCCC

Downstream 100 bases:

>100_bases
CAGCGACGGCTTACGGTTTCCGCCTCGACCGCGGGAGCCGTTCTTGGAATGTCGTACCACGCGCCTATCCTCGTCGTAAC
CGACGATGAAAGTTCGCCGA

Product: acid-CoA ligase

Products: NA

Alternate protein names: Acid-CoA Ligase; Acyl-CoA Synthetase/AMP-Acid Ligase II-Like Protein; Acyl-CoA Ligase/Synthetase; AMP-Dependent Acyl-CoA Synthetase/AMP-Acid Ligases II; 2 3-Dihydrosybenzoate-AMP Ligase; Peroxisomal-Co A Synthetase; Fatty-Acid-CoA Ligase

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MSPPNTSPTLDGLFRRTLARQPDAIALIDPPDKQRITGQPPRRMTYAEADRAISALAAHFVTAGLPSNSVIAVQLPNTIE
FPLTVLAAHRAGLVVALLPQLWRHADLTAALNRTGARAIVSTRWIDGVSHSDLAMNAAAEAFSIRHVCGFGDDLPEGMAS
LDAAMEDPTALPPAPGPQEARRAAVISFDTTGDGVRAIPRSHLHLIAGGLVVFLESAIPQGAVMLSAQTPATFAGLASSM
VTWLLSGGTLALHHPFDDAVLERQIVDLGCQALVAPAPLALRLGEAGLTAQAPSLRSVVGLWRAPEQVASSPNWIGAPVH
FTDIYLFGEAGLFGAQRAADGTPAAVMPGPHTAPRDHAGGSTAGEILITPKGTLGLRGPMVTLAAYAPLPPLNSSIPMAP
PPDFVDTGYAARLDRATGAVCITAPPAGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRLSGYRLAGRAQDNSRAREA
LAELGLNPLMVEAFRDAPKVDENRASTLTPH

Sequences:

>Translated_511_residues
MSPPNTSPTLDGLFRRTLARQPDAIALIDPPDKQRITGQPPRRMTYAEADRAISALAAHFVTAGLPSNSVIAVQLPNTIE
FPLTVLAAHRAGLVVALLPQLWRHADLTAALNRTGARAIVSTRWIDGVSHSDLAMNAAAEAFSIRHVCGFGDDLPEGMAS
LDAAMEDPTALPPAPGPQEARRAAVISFDTTGDGVRAIPRSHLHLIAGGLVVFLESAIPQGAVMLSAQTPATFAGLASSM
VTWLLSGGTLALHHPFDDAVLERQIVDLGCQALVAPAPLALRLGEAGLTAQAPSLRSVVGLWRAPEQVASSPNWIGAPVH
FTDIYLFGEAGLFGAQRAADGTPAAVMPGPHTAPRDHAGGSTAGEILITPKGTLGLRGPMVTLAAYAPLPPLNSSIPMAP
PPDFVDTGYAARLDRATGAVCITAPPAGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRLSGYRLAGRAQDNSRAREA
LAELGLNPLMVEAFRDAPKVDENRASTLTPH
>Mature_510_residues
SPPNTSPTLDGLFRRTLARQPDAIALIDPPDKQRITGQPPRRMTYAEADRAISALAAHFVTAGLPSNSVIAVQLPNTIEF
PLTVLAAHRAGLVVALLPQLWRHADLTAALNRTGARAIVSTRWIDGVSHSDLAMNAAAEAFSIRHVCGFGDDLPEGMASL
DAAMEDPTALPPAPGPQEARRAAVISFDTTGDGVRAIPRSHLHLIAGGLVVFLESAIPQGAVMLSAQTPATFAGLASSMV
TWLLSGGTLALHHPFDDAVLERQIVDLGCQALVAPAPLALRLGEAGLTAQAPSLRSVVGLWRAPEQVASSPNWIGAPVHF
TDIYLFGEAGLFGAQRAADGTPAAVMPGPHTAPRDHAGGSTAGEILITPKGTLGLRGPMVTLAAYAPLPPLNSSIPMAPP
PDFVDTGYAARLDRATGAVCITAPPAGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRLSGYRLAGRAQDNSRAREAL
AELGLNPLMVEAFRDAPKVDENRASTLTPH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53435; Mature: 53304

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPNTSPTLDGLFRRTLARQPDAIALIDPPDKQRITGQPPRRMTYAEADRAISALAAHF
CCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VTAGLPSNSVIAVQLPNTIEFPLTVLAAHRAGLVVALLPQLWRHADLTAALNRTGARAIV
HHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCHHHH
STRWIDGVSHSDLAMNAAAEAFSIRHVCGFGDDLPEGMASLDAAMEDPTALPPAPGPQEA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
RRAAVISFDTTGDGVRAIPRSHLHLIAGGLVVFLESAIPQGAVMLSAQTPATFAGLASSM
CCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
VTWLLSGGTLALHHPFDDAVLERQIVDLGCQALVAPAPLALRLGEAGLTAQAPSLRSVVG
HHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
LWRAPEQVASSPNWIGAPVHFTDIYLFGEAGLFGAQRAADGTPAAVMPGPHTAPRDHAGG
HHCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
STAGEILITPKGTLGLRGPMVTLAAYAPLPPLNSSIPMAPPPDFVDTGYAARLDRATGAV
CCCCEEEEECCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHCCCCEE
CITAPPAGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRLSGYRLAGRAQDNSRAREA
EEECCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCEEECCCCCHHHHHHH
LAELGLNPLMVEAFRDAPKVDENRASTLTPH
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPPNTSPTLDGLFRRTLARQPDAIALIDPPDKQRITGQPPRRMTYAEADRAISALAAHF
CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VTAGLPSNSVIAVQLPNTIEFPLTVLAAHRAGLVVALLPQLWRHADLTAALNRTGARAIV
HHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCHHHH
STRWIDGVSHSDLAMNAAAEAFSIRHVCGFGDDLPEGMASLDAAMEDPTALPPAPGPQEA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
RRAAVISFDTTGDGVRAIPRSHLHLIAGGLVVFLESAIPQGAVMLSAQTPATFAGLASSM
CCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
VTWLLSGGTLALHHPFDDAVLERQIVDLGCQALVAPAPLALRLGEAGLTAQAPSLRSVVG
HHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
LWRAPEQVASSPNWIGAPVHFTDIYLFGEAGLFGAQRAADGTPAAVMPGPHTAPRDHAGG
HHCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
STAGEILITPKGTLGLRGPMVTLAAYAPLPPLNSSIPMAPPPDFVDTGYAARLDRATGAV
CCCCEEEEECCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHCCCCEE
CITAPPAGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRLSGYRLAGRAQDNSRAREA
EEECCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCEEECCCCCHHHHHHH
LAELGLNPLMVEAFRDAPKVDENRASTLTPH
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA