| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291073
Identifier: 192291073
GI number: 192291073
Start: 2922611
End: 2924341
Strand: Reverse
Name: 192291073
Synonym: Rpal_2694
Alternate gene names: NA
Gene position: 2924341-2922611 (Counterclockwise)
Preceding gene: 192291074
Following gene: 192291069
Centisome position: 50.91
GC content: 52.34
Gene sequence:
>1731_bases ATGTCCGAAGATGCTTGGTACTACGTCAACTCAGGAGAACGATTCGGTCCGGTCAGCTTGGCGAACCTAAAGAGACTGAT TTCCTCGCTTCCCAACCCCGAAAGGTGCTTGGTTTGGTCTGCAAAGCTCCCGGACTGGACTGCAGCCGGAGACATCAACG AACTCCAGCCTTTGACGCCCCCACCTATTCCTAACGAACCGCAGGAGCCCCCCCGCCCCGAATGGCGAGTTCGTTGGTGG TGGTACGTTGTCGCCCTTTTCTGTCTTGGCTCGATTGGAAGCCAAGACGGACGAACGGCGATGCAATGGGCATCGCGAAA TCGTGCTGAGCGCCGCAGGATCAGATACGGCAATTCGGTGGTCGACGACAAGAGGCCGAATGTCGCAACTGCGGCCCCAT TACCATCAAGCAACTACATCACGCGTCACTGGCGAGGCGACCTATCACTTCCAGTTTCGTATTGGGTGAATGGATTCCTA GGAAATATCGCTACAGCCGGCGCAATCATCTTTCTCGGCAAAGGCCTCGATTTCAAAGATGAATTTCGCCCTGAAATAGC GCTTGCGAGTGCGACCGCCATTTGGGCCACGATAGTTCTTGTAGCGACCTGGCAGGTTGTCGGCGTTTGGCGTTCAGCAA CTCACTACTCAGAACAACATGTTCGGAGCTATTGGGGCGGTATTGCAAAGTTCGTAGTGTTCCTCGCTGCCCTAAAGCTC GGTGGCCAGATCCTAACAAATGCGATCCCTCAAATTACTGAATTTGCTAGAATCTATGCCGGAGACGCTAGCGTAGGAAA ATACAAATTCCACGTTATCAACGACGGCCGAGAACTTGAATTAGTAGGGGGCATCACATTTGGAGCTGCCAAAGATCTCG AATCCTTTGCAGACGCTCTGAGCTCCCTCAAAACAGTTCGATTGACCTCGAATGGAGGGCGGATCTCCGAAGCAGCGCGA ATCGCGGCGCAGATTAGAAAGAGAGGTCTGAACACCTACGTTCCGACCTATTGCGTATCGGCCTGCACTATTGCCTTCCT AGGCGGCCAACAACGGCTGGTTGGAACAAGCGCAAAGCTGGGATTCCACCAGCCTGATTTCCCAGGGATATCAGCAGTAG ATCGGAGGGAATTGATCGCGGAAGAGGAGCGTAGATTAACCTCATTGGGGGTTAGTCCAGCTTTCGCTCGAAAAGTGAAT TCCACGCCTCCAAGCAACATGTGGTTTCCGACTCTTTCAGAGCTCAAGTCAGGGGGCCTCGTCACGAAGACCTTGGACAT AGATGACAGTCCGGTTTCTTACGAGGCCTTTGTGACCCGGGAAGGTAAGTTTTCTATCGATTTCGGTGGCGTGCCTAAAT TGACCAAAGGCACAGGCCGGCCGGCTAATGGTGTCTCATACGACTCCTACACTTGGTCAACGGGTGGAACGACCGTATAC AAAGCGGTTGTGATGTTCGTCTATTCTGAGAGCATCAAAGTTAGCTTTGATGGCGCTATAGCTGGCGCTGCACAAAACGC AAAAGCCCAACTGGTCAAAGAGCAGCCAGTGAAACTGGCCGATTTCGAGGGTCGAGAAGCTTTCCTGGAAACGCAAGACT CGATGGAAATTAGGTTGAGATACTTTTTTATCGGTGGCCGCCTATACCAACTAATGGTAGTCGCCCATTTGGGGGAAACC ACAACGCCAGCAGCCAATGCGTTCTTTGACTCGTTTCATTTCACATTCTGA
Upstream 100 bases:
>100_bases GTTTGAGCAGCCGTCCTCATCGACCGGTCTTTTCCCTTGAACCGGCAGGAACCTTGGTTGAATTTCGGCGGAGATGCAAT TGACTGCGCGGGGGCGCGGA
Downstream 100 bases:
>100_bases TTACGGCATCGGGATCGATAGCTTGCTTTCAGACAAGCGCACGTAGGTCTATAGGGGGCTCTACGGATCCGTTTCAATTG CAGCGAGACTACCCTGACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 576; Mature: 575
Protein sequence:
>576_residues MSEDAWYYVNSGERFGPVSLANLKRLISSLPNPERCLVWSAKLPDWTAAGDINELQPLTPPPIPNEPQEPPRPEWRVRWW WYVVALFCLGSIGSQDGRTAMQWASRNRAERRRIRYGNSVVDDKRPNVATAAPLPSSNYITRHWRGDLSLPVSYWVNGFL GNIATAGAIIFLGKGLDFKDEFRPEIALASATAIWATIVLVATWQVVGVWRSATHYSEQHVRSYWGGIAKFVVFLAALKL GGQILTNAIPQITEFARIYAGDASVGKYKFHVINDGRELELVGGITFGAAKDLESFADALSSLKTVRLTSNGGRISEAAR IAAQIRKRGLNTYVPTYCVSACTIAFLGGQQRLVGTSAKLGFHQPDFPGISAVDRRELIAEEERRLTSLGVSPAFARKVN STPPSNMWFPTLSELKSGGLVTKTLDIDDSPVSYEAFVTREGKFSIDFGGVPKLTKGTGRPANGVSYDSYTWSTGGTTVY KAVVMFVYSESIKVSFDGAIAGAAQNAKAQLVKEQPVKLADFEGREAFLETQDSMEIRLRYFFIGGRLYQLMVVAHLGET TTPAANAFFDSFHFTF
Sequences:
>Translated_576_residues MSEDAWYYVNSGERFGPVSLANLKRLISSLPNPERCLVWSAKLPDWTAAGDINELQPLTPPPIPNEPQEPPRPEWRVRWW WYVVALFCLGSIGSQDGRTAMQWASRNRAERRRIRYGNSVVDDKRPNVATAAPLPSSNYITRHWRGDLSLPVSYWVNGFL GNIATAGAIIFLGKGLDFKDEFRPEIALASATAIWATIVLVATWQVVGVWRSATHYSEQHVRSYWGGIAKFVVFLAALKL GGQILTNAIPQITEFARIYAGDASVGKYKFHVINDGRELELVGGITFGAAKDLESFADALSSLKTVRLTSNGGRISEAAR IAAQIRKRGLNTYVPTYCVSACTIAFLGGQQRLVGTSAKLGFHQPDFPGISAVDRRELIAEEERRLTSLGVSPAFARKVN STPPSNMWFPTLSELKSGGLVTKTLDIDDSPVSYEAFVTREGKFSIDFGGVPKLTKGTGRPANGVSYDSYTWSTGGTTVY KAVVMFVYSESIKVSFDGAIAGAAQNAKAQLVKEQPVKLADFEGREAFLETQDSMEIRLRYFFIGGRLYQLMVVAHLGET TTPAANAFFDSFHFTF >Mature_575_residues SEDAWYYVNSGERFGPVSLANLKRLISSLPNPERCLVWSAKLPDWTAAGDINELQPLTPPPIPNEPQEPPRPEWRVRWWW YVVALFCLGSIGSQDGRTAMQWASRNRAERRRIRYGNSVVDDKRPNVATAAPLPSSNYITRHWRGDLSLPVSYWVNGFLG NIATAGAIIFLGKGLDFKDEFRPEIALASATAIWATIVLVATWQVVGVWRSATHYSEQHVRSYWGGIAKFVVFLAALKLG GQILTNAIPQITEFARIYAGDASVGKYKFHVINDGRELELVGGITFGAAKDLESFADALSSLKTVRLTSNGGRISEAARI AAQIRKRGLNTYVPTYCVSACTIAFLGGQQRLVGTSAKLGFHQPDFPGISAVDRRELIAEEERRLTSLGVSPAFARKVNS TPPSNMWFPTLSELKSGGLVTKTLDIDDSPVSYEAFVTREGKFSIDFGGVPKLTKGTGRPANGVSYDSYTWSTGGTTVYK AVVMFVYSESIKVSFDGAIAGAAQNAKAQLVKEQPVKLADFEGREAFLETQDSMEIRLRYFFIGGRLYQLMVVAHLGETT TPAANAFFDSFHFTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63488; Mature: 63357
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEDAWYYVNSGERFGPVSLANLKRLISSLPNPERCLVWSAKLPDWTAAGDINELQPLTP CCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC PPIPNEPQEPPRPEWRVRWWWYVVALFCLGSIGSQDGRTAMQWASRNRAERRRIRYGNSV CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCC VDDKRPNVATAAPLPSSNYITRHWRGDLSLPVSYWVNGFLGNIATAGAIIFLGKGLDFKD CCCCCCCCEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHH EFRPEIALASATAIWATIVLVATWQVVGVWRSATHYSEQHVRSYWGGIAKFVVFLAALKL HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGQILTNAIPQITEFARIYAGDASVGKYKFHVINDGRELELVGGITFGAAKDLESFADAL CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECEECCCHHHHHHHHHHH SSLKTVRLTSNGGRISEAARIAAQIRKRGLNTYVPTYCVSACTIAFLGGQQRLVGTSAKL HCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC GFHQPDFPGISAVDRRELIAEEERRLTSLGVSPAFARKVNSTPPSNMWFPTLSELKSGGL CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHCCCC VTKTLDIDDSPVSYEAFVTREGKFSIDFGGVPKLTKGTGRPANGVSYDSYTWSTGGTTVY EEEEECCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHH KAVVMFVYSESIKVSFDGAIAGAAQNAKAQLVKEQPVKLADFEGREAFLETQDSMEIRLR HHHHHHHHCCCEEEEECCEECCCCCCHHHHHHHHCCCEEECCCCCHHHHCCCCCEEEEEE YFFIGGRLYQLMVVAHLGETTTPAANAFFDSFHFTF EEEECHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure SEDAWYYVNSGERFGPVSLANLKRLISSLPNPERCLVWSAKLPDWTAAGDINELQPLTP CCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC PPIPNEPQEPPRPEWRVRWWWYVVALFCLGSIGSQDGRTAMQWASRNRAERRRIRYGNSV CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCC VDDKRPNVATAAPLPSSNYITRHWRGDLSLPVSYWVNGFLGNIATAGAIIFLGKGLDFKD CCCCCCCCEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHH EFRPEIALASATAIWATIVLVATWQVVGVWRSATHYSEQHVRSYWGGIAKFVVFLAALKL HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGQILTNAIPQITEFARIYAGDASVGKYKFHVINDGRELELVGGITFGAAKDLESFADAL CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECEECCCHHHHHHHHHHH SSLKTVRLTSNGGRISEAARIAAQIRKRGLNTYVPTYCVSACTIAFLGGQQRLVGTSAKL HCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC GFHQPDFPGISAVDRRELIAEEERRLTSLGVSPAFARKVNSTPPSNMWFPTLSELKSGGL CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHCCCC VTKTLDIDDSPVSYEAFVTREGKFSIDFGGVPKLTKGTGRPANGVSYDSYTWSTGGTTVY EEEEECCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHH KAVVMFVYSESIKVSFDGAIAGAAQNAKAQLVKEQPVKLADFEGREAFLETQDSMEIRLR HHHHHHHHCCCEEEEECCEECCCCCCHHHHHHHHCCCEEECCCCCHHHHCCCCCEEEEEE YFFIGGRLYQLMVVAHLGETTTPAANAFFDSFHFTF EEEECHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA