Click here to switch to the map view.

The map label for this gene is nrdD [H]

Identifier: 192291023

GI number: 192291023

Start: 2864643

End: 2866664

Strand: Reverse

Name: nrdD [H]

Synonym: Rpal_2642

Alternate gene names: 192291023

Gene position: 2866664-2864643 (Counterclockwise)

Preceding gene: 192291024

Following gene: 192291022

Centisome position: 49.91

GC content: 63.06

Gene sequence:

>2022_bases
ATGCCTGTTTCCGACCTGACCAACCTTCCTCGAGCGATCATCAAGCGGAGCGGCGCTGAAGCTGCGTTCGCCAGCGCCAA
GATCCGATCCGCGATCGCGCGCGCCGGACAGGCCACGGGGGAGTTCGGCGAACTCGAAGCGGGGCTTCTCACCAGTCAGT
CGGTCAAGGTGATTGCGCACCGCTTCGCCGGCGCCGTGCCGCAGATCGAGCAGATTCAAGATATCGTCGAGCAGGTGCTG
ATCTCGGCGAACCATCTGACCACCGCGCGGGCGTACATCGTCTATCGCGAAAAGCGTTCCCAGGCGCGCAACGACCGCAA
GGTCGCCGTCGATGCGATCGCGTCGATCAACGAATATCTCGACCGCACCGACTGGCGGGTCAACGCCAATGCCAACCAGG
GCTATTCACTCGGCGGCCTGATCCTCAATCTGTCCGGCAAGGTGGTCGCCAACTACTGGCTGTCGCACGTCTATCCGCCG
GAAGTCGGCCGCGCCCATCGCGACGGCGACCTGCATATTCACGACCTCGACATGCTGTCCGGCTACTGCGCCGGCTGGTC
GCTGCGCATGTTGCTCACCGAGGGCTTGAACGGCGTGCCCGGCAAGGTCGAGGCCAGCCCGCCGAAGCATCTGTCGAGCG
CAATCGGCCAGATCGTCAATTTTCTCGGCACGCTGCAGAACGAATGGGCCGGCGCCCAGGCGTTCAGCTCGTTCGACACC
TATCTCGCGCCGTTCCTGCGCAAGGACGGGCTGAGCTACGCCGACGTGCTGCAGGGCATCCAGGAACTGGTCTACAACCT
CAACGTCCCGTCGCGCTGGGGCACGCAGACGCCGTTCACCAACCTCACCTTCGACTGGACCTGCCCGGAAGATCTGCGCG
ACGAGGTGCCGGTAATCGGCGGCGAGGAGATGGACTTCACCTATGGTGAGCTTCAGCCCGAAATGGACATGATCAACCGC
GCCTACATGGAGGTCATGACCAAGGGCGACGCCAAAGGACGCGTCTTCACCTTCCCGATCCCGACCTACAATATCACGCC
GGATTTTCCCTGGGAGAGCGAGAACGCCGAACGGCTGTTCGAGATGACCGCGAAATACGGCCTGCCCTACTTCCAGAACT
TCCTGAACTCCGAACTGAAGCCGCACATGATCCGTTCGATGTGTTGCCGGCTGCAGCTCGATCTCACCGAACTCTTGAAG
CGCGGCAACGGCCTGTTCGGAAGCGCGGAGCAGACAGGCTCGATCGGCGTGGTGACGATCAACTGCGCGCGGCTCGGTCA
TCGGCACCGCGGCGACGAAGCGGGGCTGCTGCGCGCGCTCGATACCCTGCTCGACATCGCCCGCACCAGCCTCGAGATCA
AACGCAAGGTGGTGCAGCGCTACATGGACGACGGGCTGTTCCCCTATTCGAAGCGTTATCTCGGCACGCTGCGCAACCAT
TTCTCCACCGTCGGCATCAACGGCGTCAACGAAATGATCCGCAACTTCACCGCGGACTGCGAGACCATCGCGACGCCGTG
GGGGCACGGCTTCGCCGTCCGTGTCCTCGACCATGTGCGCGCCAGGATCGTCGCGTTCCAAGAGCAGACCGGCAATCTGT
ACAATCTCGAGGCCACGCCGGCGGAAGGCACGACCTATCGGTTCGCCAAGGAAGACCGCAAGCGCTTCCCCGGCATCCTG
CAGGCCGGCACCGAGGACAATCCGTACTACACCAACTCAAGTCAGCTTCCGGTCGGCTTCACCGACGATCCGTTCGAGGC
GCTGGAACGCCAGGACGATCTGCAGCGCAAATACACCGGCGGGACAGTACTGCATCTCTACATGGGATCGAAGCTGTCGT
CCGGCGAGGCCTGCAAGAAGCTGGTGCGACGCGCGCTGGAGAACTTCCGGCTGCCTTACGTCACGGTGACACCGACCTTC
TCGATCTGCCCAACCCATGGCTATATCGAAGGCGAACACGCCTTCTGCCCGAAATGCGACGCCGAACGCCTCGCGGCCAA
GCGGCTCGCCGCCACCCACTGA

Upstream 100 bases:

>100_bases
TGTCCCGGTGGGTCGCTTGCTTCCATGCGTACGGCATCTCCGTACGACTCTTGCATGCGCCTGCCTGGCCCCGGCCCGCA
ATTCGACCCGCGGGGTGCCG

Downstream 100 bases:

>100_bases
ACAGAAGGAGACGATTGATGAACGCCCACGTGACCATCCCCACTGACGCGATCGACACCATCGCGCTGACCGACGCCGAG
CGCCAACCCTGCGAGATCTG

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 672

Protein sequence:

>673_residues
MPVSDLTNLPRAIIKRSGAEAAFASAKIRSAIARAGQATGEFGELEAGLLTSQSVKVIAHRFAGAVPQIEQIQDIVEQVL
ISANHLTTARAYIVYREKRSQARNDRKVAVDAIASINEYLDRTDWRVNANANQGYSLGGLILNLSGKVVANYWLSHVYPP
EVGRAHRDGDLHIHDLDMLSGYCAGWSLRMLLTEGLNGVPGKVEASPPKHLSSAIGQIVNFLGTLQNEWAGAQAFSSFDT
YLAPFLRKDGLSYADVLQGIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDEVPVIGGEEMDFTYGELQPEMDMINR
AYMEVMTKGDAKGRVFTFPIPTYNITPDFPWESENAERLFEMTAKYGLPYFQNFLNSELKPHMIRSMCCRLQLDLTELLK
RGNGLFGSAEQTGSIGVVTINCARLGHRHRGDEAGLLRALDTLLDIARTSLEIKRKVVQRYMDDGLFPYSKRYLGTLRNH
FSTVGINGVNEMIRNFTADCETIATPWGHGFAVRVLDHVRARIVAFQEQTGNLYNLEATPAEGTTYRFAKEDRKRFPGIL
QAGTEDNPYYTNSSQLPVGFTDDPFEALERQDDLQRKYTGGTVLHLYMGSKLSSGEACKKLVRRALENFRLPYVTVTPTF
SICPTHGYIEGEHAFCPKCDAERLAAKRLAATH

Sequences:

>Translated_673_residues
MPVSDLTNLPRAIIKRSGAEAAFASAKIRSAIARAGQATGEFGELEAGLLTSQSVKVIAHRFAGAVPQIEQIQDIVEQVL
ISANHLTTARAYIVYREKRSQARNDRKVAVDAIASINEYLDRTDWRVNANANQGYSLGGLILNLSGKVVANYWLSHVYPP
EVGRAHRDGDLHIHDLDMLSGYCAGWSLRMLLTEGLNGVPGKVEASPPKHLSSAIGQIVNFLGTLQNEWAGAQAFSSFDT
YLAPFLRKDGLSYADVLQGIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDEVPVIGGEEMDFTYGELQPEMDMINR
AYMEVMTKGDAKGRVFTFPIPTYNITPDFPWESENAERLFEMTAKYGLPYFQNFLNSELKPHMIRSMCCRLQLDLTELLK
RGNGLFGSAEQTGSIGVVTINCARLGHRHRGDEAGLLRALDTLLDIARTSLEIKRKVVQRYMDDGLFPYSKRYLGTLRNH
FSTVGINGVNEMIRNFTADCETIATPWGHGFAVRVLDHVRARIVAFQEQTGNLYNLEATPAEGTTYRFAKEDRKRFPGIL
QAGTEDNPYYTNSSQLPVGFTDDPFEALERQDDLQRKYTGGTVLHLYMGSKLSSGEACKKLVRRALENFRLPYVTVTPTF
SICPTHGYIEGEHAFCPKCDAERLAAKRLAATH
>Mature_672_residues
PVSDLTNLPRAIIKRSGAEAAFASAKIRSAIARAGQATGEFGELEAGLLTSQSVKVIAHRFAGAVPQIEQIQDIVEQVLI
SANHLTTARAYIVYREKRSQARNDRKVAVDAIASINEYLDRTDWRVNANANQGYSLGGLILNLSGKVVANYWLSHVYPPE
VGRAHRDGDLHIHDLDMLSGYCAGWSLRMLLTEGLNGVPGKVEASPPKHLSSAIGQIVNFLGTLQNEWAGAQAFSSFDTY
LAPFLRKDGLSYADVLQGIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDEVPVIGGEEMDFTYGELQPEMDMINRA
YMEVMTKGDAKGRVFTFPIPTYNITPDFPWESENAERLFEMTAKYGLPYFQNFLNSELKPHMIRSMCCRLQLDLTELLKR
GNGLFGSAEQTGSIGVVTINCARLGHRHRGDEAGLLRALDTLLDIARTSLEIKRKVVQRYMDDGLFPYSKRYLGTLRNHF
STVGINGVNEMIRNFTADCETIATPWGHGFAVRVLDHVRARIVAFQEQTGNLYNLEATPAEGTTYRFAKEDRKRFPGILQ
AGTEDNPYYTNSSQLPVGFTDDPFEALERQDDLQRKYTGGTVLHLYMGSKLSSGEACKKLVRRALENFRLPYVTVTPTFS
ICPTHGYIEGEHAFCPKCDAERLAAKRLAATH

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=721, Percent_Identity=23.5783633841886, Blast_Score=130, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 75119; Mature: 74988

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSDLTNLPRAIIKRSGAEAAFASAKIRSAIARAGQATGEFGELEAGLLTSQSVKVIAH
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHH
RFAGAVPQIEQIQDIVEQVLISANHLTTARAYIVYREKRSQARNDRKVAVDAIASINEYL
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHH
DRTDWRVNANANQGYSLGGLILNLSGKVVANYWLSHVYPPEVGRAHRDGDLHIHDLDMLS
CCCCEEEECCCCCCCEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHH
GYCAGWSLRMLLTEGLNGVPGKVEASPPKHLSSAIGQIVNFLGTLQNEWAGAQAFSSFDT
HHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YLAPFLRKDGLSYADVLQGIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDEVPVIG
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
GEEMDFTYGELQPEMDMINRAYMEVMTKGDAKGRVFTFPIPTYNITPDFPWESENAERLF
CCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHH
EMTAKYGLPYFQNFLNSELKPHMIRSMCCRLQLDLTELLKRGNGLFGSAEQTGSIGVVTI
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEEEEEE
NCARLGHRHRGDEAGLLRALDTLLDIARTSLEIKRKVVQRYMDDGLFPYSKRYLGTLRNH
EHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FSTVGINGVNEMIRNFTADCETIATPWGHGFAVRVLDHVRARIVAFQEQTGNLYNLEATP
HHHCCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
AEGTTYRFAKEDRKRFPGILQAGTEDNPYYTNSSQLPVGFTDDPFEALERQDDLQRKYTG
CCCCEEHHHHHHHHHCCCHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
GTVLHLYMGSKLSSGEACKKLVRRALENFRLPYVTVTPTFSICPTHGYIEGEHAFCPKCD
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCEECCCCCCCCCCC
AERLAAKRLAATH
HHHHHHHHHHCCC
>Mature Secondary Structure 
PVSDLTNLPRAIIKRSGAEAAFASAKIRSAIARAGQATGEFGELEAGLLTSQSVKVIAH
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHH
RFAGAVPQIEQIQDIVEQVLISANHLTTARAYIVYREKRSQARNDRKVAVDAIASINEYL
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHH
DRTDWRVNANANQGYSLGGLILNLSGKVVANYWLSHVYPPEVGRAHRDGDLHIHDLDMLS
CCCCEEEECCCCCCCEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHH
GYCAGWSLRMLLTEGLNGVPGKVEASPPKHLSSAIGQIVNFLGTLQNEWAGAQAFSSFDT
HHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YLAPFLRKDGLSYADVLQGIQELVYNLNVPSRWGTQTPFTNLTFDWTCPEDLRDEVPVIG
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
GEEMDFTYGELQPEMDMINRAYMEVMTKGDAKGRVFTFPIPTYNITPDFPWESENAERLF
CCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHH
EMTAKYGLPYFQNFLNSELKPHMIRSMCCRLQLDLTELLKRGNGLFGSAEQTGSIGVVTI
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEEEEEE
NCARLGHRHRGDEAGLLRALDTLLDIARTSLEIKRKVVQRYMDDGLFPYSKRYLGTLRNH
EHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FSTVGINGVNEMIRNFTADCETIATPWGHGFAVRVLDHVRARIVAFQEQTGNLYNLEATP
HHHCCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
AEGTTYRFAKEDRKRFPGILQAGTEDNPYYTNSSQLPVGFTDDPFEALERQDDLQRKYTG
CCCCEEHHHHHHHHHCCCHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
GTVLHLYMGSKLSSGEACKKLVRRALENFRLPYVTVTPTFSICPTHGYIEGEHAFCPKCD
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCEECCCCCCCCCCC
AERLAAKRLAATH
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]