| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is livF [H]
Identifier: 192290386
GI number: 192290386
Start: 2154787
End: 2155506
Strand: Reverse
Name: livF [H]
Synonym: Rpal_1993
Alternate gene names: 192290386
Gene position: 2155506-2154787 (Counterclockwise)
Preceding gene: 192290387
Following gene: 192290376
Centisome position: 37.53
GC content: 68.47
Gene sequence:
>720_bases ATGACCGCCCTGCTTTCGGTATCCGGCGTCTCGGTGTCCTACGGCAAGGTCGAGGCGGTGCGGAACGTGTCGCTCGACGT GCGCCAGCGCGAGATCGTCACCGTGGTCGGGGCCAACGGCGCCGGCAAGACCACCCTGCTCAGCGCTGCGATGGGCGTGC TGCCGCTGAAGGGCCGCGTCACCTTCGACGGCGTCGACGTCGCGCGGCTCGATATCGAAGACCGCGTCGCCGCCGGTCTG TCGCTGGTGCCTGAGCATCGCGAGCTGTTCGCCACCATGACGGTGGAGGACAATCTCGAACTCGGCGCGTTCCGCATCGC CAAGGCAGTGGCAGCGCAGTCGCAGGAGCGCGTGTACGGTCTGTTTCCGCGGCTGAAGGAGCGGCGCAAGCAGCTCGCCG GTACGCTCTCCGGCGGCGAGCAGCAGATGCTGGCGATGGGCCGCGCGCTGATGGGCGCACCGAAGCTGTTGATGCTCGAC GAGCCGAGCCTCGGCCTCGCCCCGATCATCGTCGCCGATATCTTCCGCATCGTCGGCGAACTGCGCGAAGCCGGCGTCTC GGTGCTGCTGGTGGAGCAGAACGCCAAGGCGGCACTGGCGATCGCCGACCGCGCCTATGTGATGGAGCTCGGCGAGTTCG TGCTCGACGGCCCGGCCTCAGAGGTCGCCCGCAACGAGGCGGTTGTCGCCAGCTATCTCGGTTTCTCGCACCCCGCCTGA
Upstream 100 bases:
>100_bases GCATCGTCGTGCTCGACTTCGGCACCAGGATCGCCGAAGGCACGCCCGACGCGATCAAGACCAATCCAGACGTGATCAAA GCCTATCTCGGAGCGCTGGC
Downstream 100 bases:
>100_bases CGGCGTCGTGGCAGCGGCCGGGACTCCCTCGCTGCCTTCGAGCTGCACCACGCAGTTGCGACCGAGATCCTTGGCGCGAT ACAGCGCCAGATCGGCGCGG
Product: ABC transporter
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MTALLSVSGVSVSYGKVEAVRNVSLDVRQREIVTVVGANGAGKTTLLSAAMGVLPLKGRVTFDGVDVARLDIEDRVAAGL SLVPEHRELFATMTVEDNLELGAFRIAKAVAAQSQERVYGLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLD EPSLGLAPIIVADIFRIVGELREAGVSVLLVEQNAKAALAIADRAYVMELGEFVLDGPASEVARNEAVVASYLGFSHPA
Sequences:
>Translated_239_residues MTALLSVSGVSVSYGKVEAVRNVSLDVRQREIVTVVGANGAGKTTLLSAAMGVLPLKGRVTFDGVDVARLDIEDRVAAGL SLVPEHRELFATMTVEDNLELGAFRIAKAVAAQSQERVYGLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLD EPSLGLAPIIVADIFRIVGELREAGVSVLLVEQNAKAALAIADRAYVMELGEFVLDGPASEVARNEAVVASYLGFSHPA >Mature_238_residues TALLSVSGVSVSYGKVEAVRNVSLDVRQREIVTVVGANGAGKTTLLSAAMGVLPLKGRVTFDGVDVARLDIEDRVAAGLS LVPEHRELFATMTVEDNLELGAFRIAKAVAAQSQERVYGLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDE PSLGLAPIIVADIFRIVGELREAGVSVLLVEQNAKAALAIADRAYVMELGEFVLDGPASEVARNEAVVASYLGFSHPA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=31.7307692307692, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=28.6384976525822, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI27881501, Length=215, Percent_Identity=28.8372093023256, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI30795238, Length=215, Percent_Identity=28.8372093023256, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI47078218, Length=205, Percent_Identity=29.2682926829268, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI45446740, Length=205, Percent_Identity=29.2682926829268, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI153792144, Length=210, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI27262624, Length=216, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI27262626, Length=216, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI116734710, Length=205, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=27.4038461538462, Blast_Score=78, Evalue=5e-15, Organism=Homo sapiens, GI105990541, Length=202, Percent_Identity=28.2178217821782, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI21536376, Length=221, Percent_Identity=28.5067873303167, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI150417984, Length=207, Percent_Identity=29.951690821256, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI148612844, Length=218, Percent_Identity=27.0642201834862, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI255708477, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI11967969, Length=218, Percent_Identity=25.6880733944954, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI6005701, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=237, Percent_Identity=26.5822784810127, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI9961252, Length=237, Percent_Identity=26.5822784810127, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI9961250, Length=237, Percent_Identity=26.5822784810127, Blast_Score=64, Evalue=8e-11, Organism=Homo sapiens, GI21729873, Length=218, Percent_Identity=29.3577981651376, Blast_Score=64, Evalue=8e-11, Organism=Homo sapiens, GI15149474, Length=218, Percent_Identity=29.3577981651376, Blast_Score=64, Evalue=8e-11, Organism=Escherichia coli, GI87082268, Length=235, Percent_Identity=52.7659574468085, Blast_Score=228, Evalue=2e-61, Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=33.8983050847458, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1789864, Length=249, Percent_Identity=31.3253012048193, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=27.9816513761468, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI87081791, Length=229, Percent_Identity=32.3144104803493, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=33.1877729257642, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=29.5454545454545, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=26.5486725663717, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=30.1255230125523, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1790525, Length=241, Percent_Identity=29.4605809128631, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=30.3571428571429, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=225, Percent_Identity=28.8888888888889, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787792, Length=228, Percent_Identity=28.0701754385965, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788472, Length=226, Percent_Identity=26.9911504424779, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789991, Length=211, Percent_Identity=28.9099526066351, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI48994943, Length=223, Percent_Identity=30.4932735426009, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787370, Length=240, Percent_Identity=28.3333333333333, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=32.1888412017167, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=237, Percent_Identity=27.4261603375527, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786253, Length=217, Percent_Identity=30.4147465437788, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788210, Length=239, Percent_Identity=26.7782426778243, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=29.2576419213974, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=28.1938325991189, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87081782, Length=221, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788897, Length=203, Percent_Identity=28.0788177339901, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=30.0469483568075, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87082267, Length=241, Percent_Identity=29.8755186721992, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1788165, Length=213, Percent_Identity=28.6384976525822, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=27.6150627615063, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787712, Length=248, Percent_Identity=28.6290322580645, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1787758, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789586, Length=228, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI48994883, Length=246, Percent_Identity=27.2357723577236, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1789032, Length=215, Percent_Identity=28.3720930232558, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081834, Length=190, Percent_Identity=29.4736842105263, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788506, Length=221, Percent_Identity=27.1493212669683, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=26.6094420600858, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI48994997, Length=231, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=28.1818181818182, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=26.25, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789963, Length=245, Percent_Identity=27.7551020408163, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=31.7972350230415, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790544, Length=243, Percent_Identity=25.1028806584362, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786563, Length=203, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788644, Length=237, Percent_Identity=24.4725738396624, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=29.1304347826087, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788450, Length=242, Percent_Identity=26.8595041322314, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787500, Length=223, Percent_Identity=28.6995515695067, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786703, Length=212, Percent_Identity=30.6603773584906, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788053, Length=219, Percent_Identity=29.2237442922374, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533608, Length=215, Percent_Identity=29.7674418604651, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI71983523, Length=202, Percent_Identity=29.2079207920792, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71983516, Length=202, Percent_Identity=29.2079207920792, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71983510, Length=202, Percent_Identity=29.2079207920792, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17510237, Length=224, Percent_Identity=25.8928571428571, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565586, Length=200, Percent_Identity=27.5, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71988343, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17541710, Length=172, Percent_Identity=32.5581395348837, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211017, Length=172, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193208177, Length=156, Percent_Identity=29.4871794871795, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17552010, Length=221, Percent_Identity=24.4343891402715, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=219, Percent_Identity=24.6575342465753, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71996809, Length=172, Percent_Identity=28.4883720930233, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211015, Length=172, Percent_Identity=28.4883720930233, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115534520, Length=177, Percent_Identity=28.2485875706215, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193209708, Length=221, Percent_Identity=25.7918552036199, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=8e-12, Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=31.3084112149533, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24648314, Length=216, Percent_Identity=28.2407407407407, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI221512771, Length=212, Percent_Identity=28.3018867924528, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24643674, Length=210, Percent_Identity=27.6190476190476, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI28574150, Length=217, Percent_Identity=27.1889400921659, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007328, Length=217, Percent_Identity=27.1889400921659, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI221500365, Length=210, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007184, Length=210, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI28571209, Length=225, Percent_Identity=23.5555555555556, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574533, Length=215, Percent_Identity=24.6511627906977, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI28573573, Length=228, Percent_Identity=25.4385964912281, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI28573571, Length=228, Percent_Identity=25.4385964912281, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357907, Length=170, Percent_Identity=31.1764705882353, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25342; Mature: 25211
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALLSVSGVSVSYGKVEAVRNVSLDVRQREIVTVVGANGAGKTTLLSAAMGVLPLKGRV CCEEEEECCCEEECCHHHHHHCCCCEECCEEEEEEEECCCCCHHHHHHHHHCCEECCCEE TFDGVDVARLDIEDRVAAGLSLVPEHRELFATMTVEDNLELGAFRIAKAVAAQSQERVYG EECCCEEEEECHHHHHHHCCCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH LFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIVGE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH LREAGVSVLLVEQNAKAALAIADRAYVMELGEFVLDGPASEVARNEAVVASYLGFSHPA HHHCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TALLSVSGVSVSYGKVEAVRNVSLDVRQREIVTVVGANGAGKTTLLSAAMGVLPLKGRV CEEEEECCCEEECCHHHHHHCCCCEECCEEEEEEEECCCCCHHHHHHHHHCCEECCCEE TFDGVDVARLDIEDRVAAGLSLVPEHRELFATMTVEDNLELGAFRIAKAVAAQSQERVYG EECCCEEEEECHHHHHHHCCCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH LFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIVGE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH LREAGVSVLLVEQNAKAALAIADRAYVMELGEFVLDGPASEVARNEAVVASYLGFSHPA HHHCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]