| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is yeiH [C]
Identifier: 192290363
GI number: 192290363
Start: 2128828
End: 2129892
Strand: Reverse
Name: yeiH [C]
Synonym: Rpal_1970
Alternate gene names: 192290363
Gene position: 2129892-2128828 (Counterclockwise)
Preceding gene: 192290370
Following gene: 192290362
Centisome position: 37.08
GC content: 67.51
Gene sequence:
>1065_bases ATGAGCCTGATCACAAATGCCAAACTCTACCCGCCCCGCCACCCACGCGCCGCCCATCTCGCGCACCACCTTGCGGCCAT CGCACCCGGGGTGCTGGTGACCGCCGCGATCGCAGCCGCCGCGGTCGGCCTGCGCGCCATTCCGGGCATGCCCGGGATCA GCCCTATGCTGCTGGCGATCCTGATCGGCATCGTCGCCCACAATGCGATCGGCACGCCGTCCTGGGCGGTACCGGGCGTC AAGTTCAGCCTCCGGCGAGTGCTGCGCTTCGCCATCATCCTGCTCGGCCTGCAGCTCACCACCGCGCAACTGATCGAGGT CGGCGGCGAAGGGCTGGCGATCATCGCCGCGACGCTGCTCGCCACCTTCTGCTTCACGGTGTGGTTCGGGCGCGTGCTCG GCGTCGACCGCAAGCTCGCCGAGCTGATCGCCGCCGGCACCTCGATCTGCGGCGCGTCCGCGATCATCGCCACCAACACC GTGACCCGCGCCGACGACGAAGACGTTGCCTATGGCGTGGCCTGCGTCACCGTGTTCGGTTCACTGGCGATGGTCAGCTA TCCGCTGTTGCAGAACGTACTCAATCTCGACGCCCACGGTTTCGGGCTGTGGACCGGCGCCTCGATCCACGAGATCGCGC AGGCCGTGGCGGTGAGCTTCCAGGGCGGACAGCGCGCCGGCGAATTCGGCACGATCGCCAAGCTGTCCCGGGTGATGATG CTGGCGCCGCTGGTGATTGGGCTCGGCATGCTGGCACGCGTCCGCGCCAAGCATCAGCCTGCCGGCGACCACACTGCGAC ACCGCCGATGCCGTGGTTCGTGCTGGGCTTCGTGGCGATGATCGGCGTCAATGAGTTCGTCGCGATCCCGCACGAGGCCG AGAGCTGGATCGTAACGATCACCGCCTTCCTGCTCTCAATGGCGCTGGCGGCGATGGGACTGGAGACCGACCTGCGCAAA CTTGCCGCGCGCGGCCTGCGCCCCGCTTTGCTCGGCCTCACCGCGTCGCTGTTCATTGCCGGCTTCTCGCTGGCGCTGAT CAAACTCACAGGATGGCATGGATGA
Upstream 100 bases:
>100_bases ACGCATCAATCAATCGTCTTGATCGATTGATTTGAAAATAATAATCTGTTTGATTGATCAATACGGAAACGCGATGGATT GGCCAACAAGGAGCCGATCC
Downstream 100 bases:
>100_bases CACTCGAGCAGCTCCGCATCTTCATCGCGGTCGCCGAACAGCAGCACATGACCCGCGCCGCAAGCGGACTGAACCTCACC CAATCGGCCACCAGCGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MSLITNAKLYPPRHPRAAHLAHHLAAIAPGVLVTAAIAAAAVGLRAIPGMPGISPMLLAILIGIVAHNAIGTPSWAVPGV KFSLRRVLRFAIILLGLQLTTAQLIEVGGEGLAIIAATLLATFCFTVWFGRVLGVDRKLAELIAAGTSICGASAIIATNT VTRADDEDVAYGVACVTVFGSLAMVSYPLLQNVLNLDAHGFGLWTGASIHEIAQAVAVSFQGGQRAGEFGTIAKLSRVMM LAPLVIGLGMLARVRAKHQPAGDHTATPPMPWFVLGFVAMIGVNEFVAIPHEAESWIVTITAFLLSMALAAMGLETDLRK LAARGLRPALLGLTASLFIAGFSLALIKLTGWHG
Sequences:
>Translated_354_residues MSLITNAKLYPPRHPRAAHLAHHLAAIAPGVLVTAAIAAAAVGLRAIPGMPGISPMLLAILIGIVAHNAIGTPSWAVPGV KFSLRRVLRFAIILLGLQLTTAQLIEVGGEGLAIIAATLLATFCFTVWFGRVLGVDRKLAELIAAGTSICGASAIIATNT VTRADDEDVAYGVACVTVFGSLAMVSYPLLQNVLNLDAHGFGLWTGASIHEIAQAVAVSFQGGQRAGEFGTIAKLSRVMM LAPLVIGLGMLARVRAKHQPAGDHTATPPMPWFVLGFVAMIGVNEFVAIPHEAESWIVTITAFLLSMALAAMGLETDLRK LAARGLRPALLGLTASLFIAGFSLALIKLTGWHG >Mature_353_residues SLITNAKLYPPRHPRAAHLAHHLAAIAPGVLVTAAIAAAAVGLRAIPGMPGISPMLLAILIGIVAHNAIGTPSWAVPGVK FSLRRVLRFAIILLGLQLTTAQLIEVGGEGLAIIAATLLATFCFTVWFGRVLGVDRKLAELIAAGTSICGASAIIATNTV TRADDEDVAYGVACVTVFGSLAMVSYPLLQNVLNLDAHGFGLWTGASIHEIAQAVAVSFQGGQRAGEFGTIAKLSRVMML APLVIGLGMLARVRAKHQPAGDHTATPPMPWFVLGFVAMIGVNEFVAIPHEAESWIVTITAFLLSMALAAMGLETDLRKL AARGLRPALLGLTASLFIAGFSLALIKLTGWHG
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=312, Percent_Identity=36.2179487179487, Blast_Score=165, Evalue=4e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 36916; Mature: 36785
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLITNAKLYPPRHPRAAHLAHHLAAIAPGVLVTAAIAAAAVGLRAIPGMPGISPMLLAI CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LIGIVAHNAIGTPSWAVPGVKFSLRRVLRFAIILLGLQLTTAQLIEVGGEGLAIIAATLL HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ATFCFTVWFGRVLGVDRKLAELIAAGTSICGASAIIATNTVTRADDEDVAYGVACVTVFG HHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCHHHHEECCCCCCCCCHHHHHHHHHHHHH SLAMVSYPLLQNVLNLDAHGFGLWTGASIHEIAQAVAVSFQGGQRAGEFGTIAKLSRVMM HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LAPLVIGLGMLARVRAKHQPAGDHTATPPMPWFVLGFVAMIGVNEFVAIPHEAESWIVTI HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHEECCCCCHHHHHHH TAFLLSMALAAMGLETDLRKLAARGLRPALLGLTASLFIAGFSLALIKLTGWHG HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SLITNAKLYPPRHPRAAHLAHHLAAIAPGVLVTAAIAAAAVGLRAIPGMPGISPMLLAI CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LIGIVAHNAIGTPSWAVPGVKFSLRRVLRFAIILLGLQLTTAQLIEVGGEGLAIIAATLL HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ATFCFTVWFGRVLGVDRKLAELIAAGTSICGASAIIATNTVTRADDEDVAYGVACVTVFG HHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCHHHHEECCCCCCCCCHHHHHHHHHHHHH SLAMVSYPLLQNVLNLDAHGFGLWTGASIHEIAQAVAVSFQGGQRAGEFGTIAKLSRVMM HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LAPLVIGLGMLARVRAKHQPAGDHTATPPMPWFVLGFVAMIGVNEFVAIPHEAESWIVTI HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHEECCCCCHHHHHHH TAFLLSMALAAMGLETDLRKLAARGLRPALLGLTASLFIAGFSLALIKLTGWHG HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA