Click here to switch to the map view.

The map label for this gene is 192290322

Identifier: 192290322

GI number: 192290322

Start: 2080450

End: 2081412

Strand: Reverse

Name: 192290322

Synonym: Rpal_1929

Alternate gene names: NA

Gene position: 2081412-2080450 (Counterclockwise)

Preceding gene: 192290323

Following gene: 192290321

Centisome position: 36.24

GC content: 67.6

Gene sequence:

>963_bases
ATGCCGGCAGTGGCGCGGATCGATCCGAAGACCATCTTCACGCCCGACGAATGGGCGCGGCTGACGCATCGCAGCTCGGC
CCGCGGCCTGTGGCTGGTGGCGCATGCGTGGGGCACGATTGCCCTCGCCGTCACGCTGGTGATGATCTGGCCGAACCCGT
TGACCTGGCTGATCGCGGTGATGATCGTCGGCACGCGGCAGCTCGGCCTCGCCATCCTGATGCACGAGGCGGCCCATGGC
GGGCTGCATCGCAATCCGAAGCTCAACGAGTGGATCGGGCAATGGCTGTGCGCGGTGCCGGTCGGCGCCGATCTGCCGGC
ATATCGGCGCTATCATCTGCAGCATCACAAATACACCCAGCAGCCGGAGGATCCCGACCTGGTGCTGTCGGCGCCGTTCC
CGATCAGCAAGGACAGTTTTGTCCGCAAGGCGATCCGCGACCTCACCGGCCAGACCTTCGTCAAGCAGCGGCTGCCAGCG
CTGAAGGCGCTGTTCGCGCCGGCGGACAGCGGCGCGCCGAAGCACGACAGCTTCGTCGCCAGCGGCAAGGCGCGCACCCA
GCGCTTCCTCGCCGCCAACGCCGTGCTGCTGGCGCTGTGCTGGCTGGCAGGCGCAGGCATTTGGTTCGTCGGCGTCTGGC
TGGTGGCGATGGCGACTTGGCTGCCGCTGGTGACGCGGGTGCGCAACATCGCCGAACACGCCTGCACCTCGACCAGCACT
GATCCGTTCAGCCAGGCCCGCACCACACTGGCCAATCCGCTGGAGCGCGCGCTGATCGCGCCATACTGGGTCAACTACCA
CGCCGAGCATCATCTGTTCATGTACCTGCCCTGCTATAATCTGCCGGAGGCGCACCGGCTGCTACAGCAGAAGGGCCTGA
TCGACCGCGTCACCGTGGCGCCGTCCTATCGCGACGTGCTGAAGCTGGCGACGACGCGGCCGCGCGCGGTGGCGGCCGAG
TAG

Upstream 100 bases:

>100_bases
CGCACCCTCACCTCGGAAGTCAGCATCATCACGCGCAGCACCGATTGACGCTGCCGGGCGCTTCCCCGACACTACCGAAA
ACAACATCAGGGAGGCGGCG

Downstream 100 bases:

>100_bases
CTGGCGCGGCGGTGCCGCTCACGGCATCGGCAGGCGCGCCTCGACGGACGCGAACCCGGGTGTGGCCAGGCCTCGCGTCT
TGCTGCGCTCGCACCAGCAT

Product: fatty acid desaturase

Products: NA

Alternate protein names: Fatty Acid Desaturase Family Protein; Fatty Acid Desaturase Subfamily; Fatty Acid Desaturase Subfamily Protein; Omega-3 Fatty Acid Desaturase Transmembrane Protein; Fatty Acid Desaturase Family Proteiin; Fatty Acid Desaturase Domain-Containing Protein; Hydrocarbon Oxygenase; Hydrocarbon Oxygenase MocD; Fatty Acid Desaturase Protein; Rhizopine Catabolism Protein MocD

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MPAVARIDPKTIFTPDEWARLTHRSSARGLWLVAHAWGTIALAVTLVMIWPNPLTWLIAVMIVGTRQLGLAILMHEAAHG
GLHRNPKLNEWIGQWLCAVPVGADLPAYRRYHLQHHKYTQQPEDPDLVLSAPFPISKDSFVRKAIRDLTGQTFVKQRLPA
LKALFAPADSGAPKHDSFVASGKARTQRFLAANAVLLALCWLAGAGIWFVGVWLVAMATWLPLVTRVRNIAEHACTSTST
DPFSQARTTLANPLERALIAPYWVNYHAEHHLFMYLPCYNLPEAHRLLQQKGLIDRVTVAPSYRDVLKLATTRPRAVAAE

Sequences:

>Translated_320_residues
MPAVARIDPKTIFTPDEWARLTHRSSARGLWLVAHAWGTIALAVTLVMIWPNPLTWLIAVMIVGTRQLGLAILMHEAAHG
GLHRNPKLNEWIGQWLCAVPVGADLPAYRRYHLQHHKYTQQPEDPDLVLSAPFPISKDSFVRKAIRDLTGQTFVKQRLPA
LKALFAPADSGAPKHDSFVASGKARTQRFLAANAVLLALCWLAGAGIWFVGVWLVAMATWLPLVTRVRNIAEHACTSTST
DPFSQARTTLANPLERALIAPYWVNYHAEHHLFMYLPCYNLPEAHRLLQQKGLIDRVTVAPSYRDVLKLATTRPRAVAAE
>Mature_319_residues
PAVARIDPKTIFTPDEWARLTHRSSARGLWLVAHAWGTIALAVTLVMIWPNPLTWLIAVMIVGTRQLGLAILMHEAAHGG
LHRNPKLNEWIGQWLCAVPVGADLPAYRRYHLQHHKYTQQPEDPDLVLSAPFPISKDSFVRKAIRDLTGQTFVKQRLPAL
KALFAPADSGAPKHDSFVASGKARTQRFLAANAVLLALCWLAGAGIWFVGVWLVAMATWLPLVTRVRNIAEHACTSTSTD
PFSQARTTLANPLERALIAPYWVNYHAEHHLFMYLPCYNLPEAHRLLQQKGLIDRVTVAPSYRDVLKLATTRPRAVAAE

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35708; Mature: 35577

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAVARIDPKTIFTPDEWARLTHRSSARGLWLVAHAWGTIALAVTLVMIWPNPLTWLIAV
CCCCCCCCCCEEECCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
MIVGTRQLGLAILMHEAAHGGLHRNPKLNEWIGQWLCAVPVGADLPAYRRYHLQHHKYTQ
HHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
QPEDPDLVLSAPFPISKDSFVRKAIRDLTGQTFVKQRLPALKALFAPADSGAPKHDSFVA
CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
SGKARTQRFLAANAVLLALCWLAGAGIWFVGVWLVAMATWLPLVTRVRNIAEHACTSTST
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DPFSQARTTLANPLERALIAPYWVNYHAEHHLFMYLPCYNLPEAHRLLQQKGLIDRVTVA
CHHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHEEEEC
PSYRDVLKLATTRPRAVAAE
CCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PAVARIDPKTIFTPDEWARLTHRSSARGLWLVAHAWGTIALAVTLVMIWPNPLTWLIAV
CCCCCCCCCEEECCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
MIVGTRQLGLAILMHEAAHGGLHRNPKLNEWIGQWLCAVPVGADLPAYRRYHLQHHKYTQ
HHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
QPEDPDLVLSAPFPISKDSFVRKAIRDLTGQTFVKQRLPALKALFAPADSGAPKHDSFVA
CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
SGKARTQRFLAANAVLLALCWLAGAGIWFVGVWLVAMATWLPLVTRVRNIAEHACTSTST
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DPFSQARTTLANPLERALIAPYWVNYHAEHHLFMYLPCYNLPEAHRLLQQKGLIDRVTVA
CHHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHEEEEC
PSYRDVLKLATTRPRAVAAE
CCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA