| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is lcfB [H]
Identifier: 192290295
GI number: 192290295
Start: 2048787
End: 2050343
Strand: Reverse
Name: lcfB [H]
Synonym: Rpal_1902
Alternate gene names: 192290295
Gene position: 2050343-2048787 (Counterclockwise)
Preceding gene: 192290296
Following gene: 192290294
Centisome position: 35.7
GC content: 65.19
Gene sequence:
>1557_bases ATGACCCATCCGTCGATTCACGCCAAATCCAATCCCGACAAAGTTGCCTACCGGATGGCCTCGACCGGTCAGGCCCTCAC CTACCGACAGCTCGACGAGCGCTCCAATCAGGGCGCGCATCTGTTCCGGTCGCTGGGGCTGAAGGCCGGCGATCACATCG CGCTGCTGATGGAAAACCGGCTGGCGTTCATGGAGATCTGCTGGGCGGCGCAGCGCGCGGGCCTGTATTACACCGCGATC AGCCGCTATTTGACCAAGGACGAGATCGGCTACATCGTGCAGGACTGCGGCGCCAAGGTGGTGATCACCTCCGCGCAGGG CAGCGAGACGATGAAGTCGCTGCTGTCGGACGCGCCGGGCGCGCCGCTCTACTACATGGTCGATCCGCCGACCGCGGGCT TCCGCTCATGGGAGCAGGAAACCGCGGCGCAGCCGACCACGCCGATCGCCGACGAAGTCGCCGGCTACGACATGCTGTAT TCCTCCGGCACCACCGGCCGACCGAAGGGCATCAAGCGCGAATTCGAAGGCAACGCCATCGACGTGCCGAGCCCGTTCCT GCGCCTGCTGTGCGAGAAGATGTGCGGCATGAACGTCGAGAGCATCTATCTGTCGCCGGCGCCGCTGTATCACGCCGCTC CTTTGCGCTTCAATATGATGGCGACCACGCTCGGCGGCACCTCGATCATCATGGAGCATTTCGACGCCGAGCAGTTCCTG GCGCTGGTCGAGAAGTACAAGGTGACGCAGTCGCAGCTGGTGCCGACGATGTTCGTGCGCATGCTGAAGCTCCCCGACGA GGTCCGCTGCCGCTATGACGTGTCGTCGCTGAAAGGCGCGATCCATGCCGCCGCGCCCTGCCCGGTCGACGTCAAGGCCA AGATGATCGAGTGGTGGGGGCCGATCCTGATCGAGTACTACGCCGGCTCCGAGGGCAACGGCGTCACGGTCTCGACCTCG CAGCAATGGCTGGCGCATCGCGGCACGGTCGGCAAGGCGGTGGTCGGCACCATCAAGATCCTCGACGACGAGGGCGAGGA GCAGCCGGTCGGCGAGATCGGCACCGTGTACTTCGCCGACGCACCGTCGTTCAGCTATCACAACGATCCGGACAAGACCA AGAAGGCCTACAACGAGAAAGGCTGGTCGACGCTCGGCGACGTCGGCTATCTCGACGACGAGGGCTTCCTGTATCTCACC GACCGCAAGAGCTACATGATCATCTCCGGCGGCGTGAACATCTACCCGCAGGAGACCGAGGACGTGCTGCTGACCCATCC GGACGTCGCCGACGTCGCGGTGTTCGGCGTGCCCAATCCCGAGATGGGCGAAGAGGTCAAAGCCGTGGTGCAGCTCCGGG ACGGCGCGGCTCCGAGCAGCGAGCGAGCGGCCGAGCTGATCGCGTTCTGCCGCGAGCGGCTGTCGCCGATCAAGTGCCCG CGTTCGGTCGACTTCGAAGCCGAGCTGCCGCGCACCCCGACCGGCAAGCTGGTCAAGCGCCACCTCAAAGACCGCTACTG GCCATCGCAGCAGAAGGCCGCCGCCGCGACCGCCTGA
Upstream 100 bases:
>100_bases CCTCCGAGGCGCGCGGTTTTTGTCGTGCTCCTCATCAAGAGGCACCGAGCCAGACAGAGCGGAGCCTAATCCGCCGTATC ACCGAGAGGAAACGATCCGC
Downstream 100 bases:
>100_bases GCCGCTCCGACCTTTCCACACCTCCGCGGCCTGCCGGCGGGGGTGTGACCTCTGATCCACCGCGGGCCGCCAAGAACGAC TCCGCTCCGTCGTCCTGCCG
Product: long-chain-fatty-acid--CoA ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 518; Mature: 517
Protein sequence:
>518_residues MTHPSIHAKSNPDKVAYRMASTGQALTYRQLDERSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRAGLYYTAI SRYLTKDEIGYIVQDCGAKVVITSAQGSETMKSLLSDAPGAPLYYMVDPPTAGFRSWEQETAAQPTTPIADEVAGYDMLY SSGTTGRPKGIKREFEGNAIDVPSPFLRLLCEKMCGMNVESIYLSPAPLYHAAPLRFNMMATTLGGTSIIMEHFDAEQFL ALVEKYKVTQSQLVPTMFVRMLKLPDEVRCRYDVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVSTS QQWLAHRGTVGKAVVGTIKILDDEGEEQPVGEIGTVYFADAPSFSYHNDPDKTKKAYNEKGWSTLGDVGYLDDEGFLYLT DRKSYMIISGGVNIYPQETEDVLLTHPDVADVAVFGVPNPEMGEEVKAVVQLRDGAAPSSERAAELIAFCRERLSPIKCP RSVDFEAELPRTPTGKLVKRHLKDRYWPSQQKAAAATA
Sequences:
>Translated_518_residues MTHPSIHAKSNPDKVAYRMASTGQALTYRQLDERSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRAGLYYTAI SRYLTKDEIGYIVQDCGAKVVITSAQGSETMKSLLSDAPGAPLYYMVDPPTAGFRSWEQETAAQPTTPIADEVAGYDMLY SSGTTGRPKGIKREFEGNAIDVPSPFLRLLCEKMCGMNVESIYLSPAPLYHAAPLRFNMMATTLGGTSIIMEHFDAEQFL ALVEKYKVTQSQLVPTMFVRMLKLPDEVRCRYDVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVSTS QQWLAHRGTVGKAVVGTIKILDDEGEEQPVGEIGTVYFADAPSFSYHNDPDKTKKAYNEKGWSTLGDVGYLDDEGFLYLT DRKSYMIISGGVNIYPQETEDVLLTHPDVADVAVFGVPNPEMGEEVKAVVQLRDGAAPSSERAAELIAFCRERLSPIKCP RSVDFEAELPRTPTGKLVKRHLKDRYWPSQQKAAAATA >Mature_517_residues THPSIHAKSNPDKVAYRMASTGQALTYRQLDERSNQGAHLFRSLGLKAGDHIALLMENRLAFMEICWAAQRAGLYYTAIS RYLTKDEIGYIVQDCGAKVVITSAQGSETMKSLLSDAPGAPLYYMVDPPTAGFRSWEQETAAQPTTPIADEVAGYDMLYS SGTTGRPKGIKREFEGNAIDVPSPFLRLLCEKMCGMNVESIYLSPAPLYHAAPLRFNMMATTLGGTSIIMEHFDAEQFLA LVEKYKVTQSQLVPTMFVRMLKLPDEVRCRYDVSSLKGAIHAAAPCPVDVKAKMIEWWGPILIEYYAGSEGNGVTVSTSQ QWLAHRGTVGKAVVGTIKILDDEGEEQPVGEIGTVYFADAPSFSYHNDPDKTKKAYNEKGWSTLGDVGYLDDEGFLYLTD RKSYMIISGGVNIYPQETEDVLLTHPDVADVAVFGVPNPEMGEEVKAVVQLRDGAAPSSERAAELIAFCRERLSPIKCPR SVDFEAELPRTPTGKLVKRHLKDRYWPSQQKAAAATA
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=541, Percent_Identity=26.4325323475046, Blast_Score=162, Evalue=6e-40, Organism=Homo sapiens, GI115511026, Length=520, Percent_Identity=25, Blast_Score=130, Evalue=4e-30, Organism=Homo sapiens, GI38505220, Length=523, Percent_Identity=26.9598470363289, Blast_Score=126, Evalue=5e-29, Organism=Homo sapiens, GI187761345, Length=536, Percent_Identity=26.865671641791, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI187761343, Length=536, Percent_Identity=26.865671641791, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI157311624, Length=531, Percent_Identity=24.105461393597, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI157311622, Length=531, Percent_Identity=24.105461393597, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI58082049, Length=531, Percent_Identity=24.2937853107345, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI122937307, Length=511, Percent_Identity=26.2230919765166, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI42544132, Length=503, Percent_Identity=24.4532803180915, Blast_Score=105, Evalue=9e-23, Organism=Homo sapiens, GI13375727, Length=531, Percent_Identity=24.4821092278719, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI227499619, Length=465, Percent_Identity=25.5913978494624, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI28416953, Length=561, Percent_Identity=23.7076648841355, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI8923896, Length=575, Percent_Identity=22.2608695652174, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI62865631, Length=541, Percent_Identity=23.2902033271719, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI13325055, Length=541, Percent_Identity=23.2902033271719, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI253970489, Length=373, Percent_Identity=25.201072386059, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI38524616, Length=482, Percent_Identity=26.1410788381743, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI40807357, Length=552, Percent_Identity=24.6376811594203, Blast_Score=82, Evalue=8e-16, Organism=Escherichia coli, GI1788107, Length=526, Percent_Identity=29.0874524714829, Blast_Score=187, Evalue=2e-48, Organism=Escherichia coli, GI221142682, Length=497, Percent_Identity=27.7665995975855, Blast_Score=173, Evalue=2e-44, Organism=Escherichia coli, GI145693145, Length=513, Percent_Identity=28.2651072124756, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1786810, Length=512, Percent_Identity=24.4140625, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1790505, Length=555, Percent_Identity=22.5225225225225, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17531443, Length=527, Percent_Identity=27.134724857685, Blast_Score=171, Evalue=1e-42, Organism=Caenorhabditis elegans, GI17558820, Length=494, Percent_Identity=27.3279352226721, Blast_Score=149, Evalue=3e-36, Organism=Caenorhabditis elegans, GI17559526, Length=508, Percent_Identity=27.755905511811, Blast_Score=145, Evalue=4e-35, Organism=Caenorhabditis elegans, GI32563687, Length=504, Percent_Identity=24.8015873015873, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI17557194, Length=525, Percent_Identity=26.8571428571429, Blast_Score=136, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71994694, Length=543, Percent_Identity=25.7826887661142, Blast_Score=136, Evalue=3e-32, Organism=Caenorhabditis elegans, GI71994703, Length=543, Percent_Identity=25.7826887661142, Blast_Score=136, Evalue=3e-32, Organism=Caenorhabditis elegans, GI71994690, Length=543, Percent_Identity=25.7826887661142, Blast_Score=135, Evalue=4e-32, Organism=Caenorhabditis elegans, GI17538037, Length=525, Percent_Identity=27.8095238095238, Blast_Score=132, Evalue=5e-31, Organism=Caenorhabditis elegans, GI17560308, Length=579, Percent_Identity=23.6614853195164, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17551278, Length=581, Percent_Identity=24.9569707401033, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71996755, Length=503, Percent_Identity=24.2544731610338, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI115534440, Length=549, Percent_Identity=25.1366120218579, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560140, Length=504, Percent_Identity=21.8253968253968, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71985884, Length=373, Percent_Identity=23.8605898123324, Blast_Score=73, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6319699, Length=547, Percent_Identity=25.9597806215722, Blast_Score=135, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6323182, Length=565, Percent_Identity=22.8318584070796, Blast_Score=101, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6319264, Length=552, Percent_Identity=21.5579710144928, Blast_Score=89, Evalue=1e-18, Organism=Drosophila melanogaster, GI24581924, Length=538, Percent_Identity=25.4646840148699, Blast_Score=136, Evalue=3e-32, Organism=Drosophila melanogaster, GI21355181, Length=490, Percent_Identity=25.9183673469388, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI24648260, Length=515, Percent_Identity=25.631067961165, Blast_Score=131, Evalue=1e-30, Organism=Drosophila melanogaster, GI19922652, Length=512, Percent_Identity=25.5859375, Blast_Score=129, Evalue=6e-30, Organism=Drosophila melanogaster, GI24648253, Length=473, Percent_Identity=24.7357293868922, Blast_Score=125, Evalue=5e-29, Organism=Drosophila melanogaster, GI24648255, Length=473, Percent_Identity=24.9471458773784, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI18859661, Length=517, Percent_Identity=25.7253384912959, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI24656500, Length=516, Percent_Identity=23.2558139534884, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI21356441, Length=467, Percent_Identity=22.6980728051392, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI21356947, Length=508, Percent_Identity=24.6062992125984, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI281365686, Length=479, Percent_Identity=22.3382045929019, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI21358303, Length=467, Percent_Identity=23.5546038543897, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24653035, Length=364, Percent_Identity=25.8241758241758, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24667955, Length=553, Percent_Identity=22.6039783001808, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI62472339, Length=537, Percent_Identity=22.7188081936685, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI161076582, Length=371, Percent_Identity=25.8760107816712, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI21355225, Length=368, Percent_Identity=25.5434782608696, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI24648257, Length=355, Percent_Identity=25.6338028169014, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24667959, Length=369, Percent_Identity=24.390243902439, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI20130357, Length=528, Percent_Identity=22.1590909090909, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI45552801, Length=548, Percent_Identity=23.7226277372263, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI45550496, Length=548, Percent_Identity=23.7226277372263, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI24583465, Length=556, Percent_Identity=23.5611510791367, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24583463, Length=556, Percent_Identity=23.5611510791367, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI281364798, Length=556, Percent_Identity=23.5611510791367, Blast_Score=83, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 57081; Mature: 56949
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHPSIHAKSNPDKVAYRMASTGQALTYRQLDERSNQGAHLFRSLGLKAGDHIALLMENR CCCCCCCCCCCCHHHEEEHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCC LAFMEICWAAQRAGLYYTAISRYLTKDEIGYIVQDCGAKVVITSAQGSETMKSLLSDAPG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCC APLYYMVDPPTAGFRSWEQETAAQPTTPIADEVAGYDMLYSSGTTGRPKGIKREFEGNAI CCEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHCCCHHEECCCCCCCCCCCCHHCCCCEE DVPSPFLRLLCEKMCGMNVESIYLSPAPLYHAAPLRFNMMATTLGGTSIIMEHFDAEQFL CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHCCHHHHH ALVEKYKVTQSQLVPTMFVRMLKLPDEVRCRYDVSSLKGAIHAAAPCPVDVKAKMIEWWG HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECHHHHCCHHHCCCCCCCCHHHHHHHHHC PILIEYYAGSEGNGVTVSTSQQWLAHRGTVGKAVVGTIKILDDEGEEQPVGEIGTVYFAD CEEEEEECCCCCCCEEEECCHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEC APSFSYHNDPDKTKKAYNEKGWSTLGDVGYLDDEGFLYLTDRKSYMIISGGVNIYPQETE CCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCEEEEECCCCEEEEECCCEECCCCCC DVLLTHPDVADVAVFGVPNPEMGEEVKAVVQLRDGAAPSSERAAELIAFCRERLSPIKCP CEEEECCCHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC RSVDFEAELPRTPTGKLVKRHLKDRYWPSQQKAAAATA CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC >Mature Secondary Structure THPSIHAKSNPDKVAYRMASTGQALTYRQLDERSNQGAHLFRSLGLKAGDHIALLMENR CCCCCCCCCCCHHHEEEHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCC LAFMEICWAAQRAGLYYTAISRYLTKDEIGYIVQDCGAKVVITSAQGSETMKSLLSDAPG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCC APLYYMVDPPTAGFRSWEQETAAQPTTPIADEVAGYDMLYSSGTTGRPKGIKREFEGNAI CCEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHCCCHHEECCCCCCCCCCCCHHCCCCEE DVPSPFLRLLCEKMCGMNVESIYLSPAPLYHAAPLRFNMMATTLGGTSIIMEHFDAEQFL CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHCCHHHHH ALVEKYKVTQSQLVPTMFVRMLKLPDEVRCRYDVSSLKGAIHAAAPCPVDVKAKMIEWWG HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECHHHHCCHHHCCCCCCCCHHHHHHHHHC PILIEYYAGSEGNGVTVSTSQQWLAHRGTVGKAVVGTIKILDDEGEEQPVGEIGTVYFAD CEEEEEECCCCCCCEEEECCHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEC APSFSYHNDPDKTKKAYNEKGWSTLGDVGYLDDEGFLYLTDRKSYMIISGGVNIYPQETE CCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCEEEEECCCCEEEEECCCEECCCCCC DVLLTHPDVADVAVFGVPNPEMGEEVKAVVQLRDGAAPSSERAAELIAFCRERLSPIKCP CEEEECCCHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC RSVDFEAELPRTPTGKLVKRHLKDRYWPSQQKAAAATA CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]