| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is bchJ [H]
Identifier: 192290259
GI number: 192290259
Start: 2000142
End: 2000852
Strand: Reverse
Name: bchJ [H]
Synonym: Rpal_1863
Alternate gene names: 192290259
Gene position: 2000852-2000142 (Counterclockwise)
Preceding gene: 192290260
Following gene: 192290258
Centisome position: 34.83
GC content: 65.4
Gene sequence:
>711_bases ATGACGCAGGTTCGGTCACCCGTCACTGACGTGGAAACGCATTCGGCGGTGTCCGAGATCGGGCCCAACGCCGTCATCCA ACTGATCCACGCGCTCGACGCGGCCGGCCTCCAGCCGGCCGCGAAAGAGATCTTCTCCGAGGCGGCGGCGAGCGACTGGC TCGCCGCTCCGCCTTCGGTGATGGTCGACGAACGCCCGGTCGCAGCGATCCATCAGGCGGTGCGCCGCGTGCTACCGCAG CAGCAGGCCGCAGCGGTTCTCGCCGACGCGGGGCTGCGCACCGGCGATTACATCCTGGCCAACCGGATTCCGAAGCTCGC GCAGGCGGTGCTGAAGATCATGCCGGCCTCGATCGCCGCCAAGATGCTGACCAAGGCGATCACTGCGCACGCCTGGACGT TTGCGGGCTCGGGCAAGTTTTCCGCGCGCGCCGGCAAGACCGTGACGTTCGAGATCGCCTCCAATCCGCTGTGCGCTGGC GAACACGCCGATCACTATGTCTGCGTCTGGCACGCCTCCGTATTTCAACGGCTATTCCAGTCGCTGGTGTCGCCCTATAC ACGAGTGACCGAGACGGCGTGCGGAGCACATGGCGACAATTGCTGTCGCTTCGTGGCGGATTGGACCTCGATCCCCGACG CCGCCAATATTTACGCCAGCAGGCGATCAGAGCCGATCGCAGGCCAGTCAGAAACCCTTTCCGCGCGTTGA
Upstream 100 bases:
>100_bases TCGGCCTGCGGCGGTGGTACCGATCAGATGGAAGAGAGCGAAGCCGATGCCAAGGCGGCGCTCGCCAAGACCGTAACCAG CCGCGTGGCGGACAGCACCC
Downstream 100 bases:
>100_bases TCCGCGGGCGATCAGAGAGATCAGGACGATGTCGTCTGCCCTCGACAAATACGCCAAGAGCTCGGTGCCGCGCTACACCA GCTATCCCACCGCACCGCAT
Product: bacteriochlorophyll 4-vinyl reductase
Products: NA
Alternate protein names: 4-vinyl reductase [H]
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MTQVRSPVTDVETHSAVSEIGPNAVIQLIHALDAAGLQPAAKEIFSEAAASDWLAAPPSVMVDERPVAAIHQAVRRVLPQ QQAAAVLADAGLRTGDYILANRIPKLAQAVLKIMPASIAAKMLTKAITAHAWTFAGSGKFSARAGKTVTFEIASNPLCAG EHADHYVCVWHASVFQRLFQSLVSPYTRVTETACGAHGDNCCRFVADWTSIPDAANIYASRRSEPIAGQSETLSAR
Sequences:
>Translated_236_residues MTQVRSPVTDVETHSAVSEIGPNAVIQLIHALDAAGLQPAAKEIFSEAAASDWLAAPPSVMVDERPVAAIHQAVRRVLPQ QQAAAVLADAGLRTGDYILANRIPKLAQAVLKIMPASIAAKMLTKAITAHAWTFAGSGKFSARAGKTVTFEIASNPLCAG EHADHYVCVWHASVFQRLFQSLVSPYTRVTETACGAHGDNCCRFVADWTSIPDAANIYASRRSEPIAGQSETLSAR >Mature_235_residues TQVRSPVTDVETHSAVSEIGPNAVIQLIHALDAAGLQPAAKEIFSEAAASDWLAAPPSVMVDERPVAAIHQAVRRVLPQQ QAAAVLADAGLRTGDYILANRIPKLAQAVLKIMPASIAAKMLTKAITAHAWTFAGSGKFSARAGKTVTFEIASNPLCAGE HADHYVCVWHASVFQRLFQSLVSPYTRVTETACGAHGDNCCRFVADWTSIPDAANIYASRRSEPIAGQSETLSAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010249 - InterPro: IPR004096 [H]
Pfam domain/function: PF02830 V4R [H]
EC number: NA
Molecular weight: Translated: 25099; Mature: 24968
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQVRSPVTDVETHSAVSEIGPNAVIQLIHALDAAGLQPAAKEIFSEAAASDWLAAPPSV CCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC MVDERPVAAIHQAVRRVLPQQQAAAVLADAGLRTGDYILANRIPKLAQAVLKIMPASIAA EECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KMLTKAITAHAWTFAGSGKFSARAGKTVTFEIASNPLCAGEHADHYVCVWHASVFQRLFQ HHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHH SLVSPYTRVTETACGAHGDNCCRFVADWTSIPDAANIYASRRSEPIAGQSETLSAR HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TQVRSPVTDVETHSAVSEIGPNAVIQLIHALDAAGLQPAAKEIFSEAAASDWLAAPPSV CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC MVDERPVAAIHQAVRRVLPQQQAAAVLADAGLRTGDYILANRIPKLAQAVLKIMPASIAA EECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KMLTKAITAHAWTFAGSGKFSARAGKTVTFEIASNPLCAGEHADHYVCVWHASVFQRLFQ HHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHH SLVSPYTRVTETACGAHGDNCCRFVADWTSIPDAANIYASRRSEPIAGQSETLSAR HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10648776 [H]