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The map label for this gene is frc [H]

Identifier: 192290165

GI number: 192290165

Start: 1898355

End: 1899563

Strand: Reverse

Name: frc [H]

Synonym: Rpal_1767

Alternate gene names: 192290165

Gene position: 1899563-1898355 (Counterclockwise)

Preceding gene: 192290166

Following gene: 192290164

Centisome position: 33.07

GC content: 66.17

Gene sequence:

>1209_bases
ATGGACGAGAACGGCATCTTCAGCGGCCTCAAGGTGCTCGATTGCGCGAGTTTCATTGCTGCACCGGCGGCCGCCACCGT
GCTGTCGGATTTCGGTGCCGACGTCATCAAGATCGAGCCGCCGGGTGCGGGTGATCCCTATCGCAACCTGCCGAACCTGC
CGGGCTATCCGATCAGCGACCACAACTACGCGTGGATGCTGGAGGCCCGCAACAAGCGCAGCCTCGCGCTCGACCTCGCC
AAGCCCGAGGGCAAGGAGGTGCTGCGCAAGCTGGTCGCCGAAGCCGACGTGTTCATCACCAACTTCCCGCCGCCAGTGCG
GGCACGCCTCGGCGTGGCTTACGCCGACCTCGCGCCGCTGAACGAGCGGCTGATCTATGCGAGCTTCACCGGCTATGGCG
AGCGCGGCGAGGAAGCCAACAAACCCGGCTTCGACAGCAACGCCTGGTGGGCACGCTCGGGCATGATGGACCTGGTGCGC
GCCGACGAGGACTCGACGCCGGCACGATCGGTCGCCGGCATGGGCGACCATCCCTGCGCGATGTCGCTGTTCGGCGCGAT
CGTCACCGCGCTGTACAAGCGCGAGCGCACCGGCAAAGGCAGCGAGGTGAAGTCGAACCTGATGGCCAACGGGCTGTGGT
CGACCAGCGTGCTGGCCCAGGCCAAGCTGGTCGGCGCCGAGTTCCAGCCGCGGCGGCCGCGCGAGCGCGCGCTCAACGCG
GTGGCCAATCACTATCGCTGCCGCGACGGCCGCTGGCTGATCCTGTCGCTGCTCAACGAAGAGAAGCAGTGGCCGACGCT
GACGAAGTGTCTCGGCCGCGAGGATCTCACCGATGATCCGCGCTTCGCCACCAAGGCGGACCGCCATGCTCGATCGATCG
AACTGATCGGCATCTTCGACGAGATCTTCGCCACCCGCGATCTCGCCGAGTGGCGCAAAGCACTCGACGGCACCGGACTG
GTGTTCGGCGTCGTCGGCATTCTCGACGACATCACCACCGACAAGCAGCTGATCGAAAACGAAGTGCTGGTGCCGTTCGA
GAACGACACCACGCTCACGATCAACAGCCCGATCTGGATCGAAGGCAGCACCAAGACCCGGCCGCGCAAGCCGCCGGGCG
TCGGCGAGCACAGCGACGAAGTGCTGCGCAGCGCGGGCTATGACGACGCCGCTATCAAGGCGCTACGTGCATCGGGTGCC
GTCGGTTAA

Upstream 100 bases:

>100_bases
GTGCTGATAACCCGGTTCATATGCGGAAGAAACCGGATCGACGCGTGCCTGCGCGAATTTCCGGACAACGAAAAAACAAG
ACGCAAGGGAGCGCACGCGC

Downstream 100 bases:

>100_bases
GAGGCGACGCGCCCCTCCGCGAGCTGCAACGTCAAGTACGCGAGGTCGGCCTCGACTTCGCCGAATGCGTGCACTGCCCC
CCCACGAGGTTTGCTCCTGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MDENGIFSGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPISDHNYAWMLEARNKRSLALDLA
KPEGKEVLRKLVAEADVFITNFPPPVRARLGVAYADLAPLNERLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVR
ADEDSTPARSVAGMGDHPCAMSLFGAIVTALYKRERTGKGSEVKSNLMANGLWSTSVLAQAKLVGAEFQPRRPRERALNA
VANHYRCRDGRWLILSLLNEEKQWPTLTKCLGREDLTDDPRFATKADRHARSIELIGIFDEIFATRDLAEWRKALDGTGL
VFGVVGILDDITTDKQLIENEVLVPFENDTTLTINSPIWIEGSTKTRPRKPPGVGEHSDEVLRSAGYDDAAIKALRASGA
VG

Sequences:

>Translated_402_residues
MDENGIFSGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPISDHNYAWMLEARNKRSLALDLA
KPEGKEVLRKLVAEADVFITNFPPPVRARLGVAYADLAPLNERLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVR
ADEDSTPARSVAGMGDHPCAMSLFGAIVTALYKRERTGKGSEVKSNLMANGLWSTSVLAQAKLVGAEFQPRRPRERALNA
VANHYRCRDGRWLILSLLNEEKQWPTLTKCLGREDLTDDPRFATKADRHARSIELIGIFDEIFATRDLAEWRKALDGTGL
VFGVVGILDDITTDKQLIENEVLVPFENDTTLTINSPIWIEGSTKTRPRKPPGVGEHSDEVLRSAGYDDAAIKALRASGA
VG
>Mature_402_residues
MDENGIFSGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPISDHNYAWMLEARNKRSLALDLA
KPEGKEVLRKLVAEADVFITNFPPPVRARLGVAYADLAPLNERLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVR
ADEDSTPARSVAGMGDHPCAMSLFGAIVTALYKRERTGKGSEVKSNLMANGLWSTSVLAQAKLVGAEFQPRRPRERALNA
VANHYRCRDGRWLILSLLNEEKQWPTLTKCLGREDLTDDPRFATKADRHARSIELIGIFDEIFATRDLAEWRKALDGTGL
VFGVVGILDDITTDKQLIENEVLVPFENDTTLTINSPIWIEGSTKTRPRKPPGVGEHSDEVLRSAGYDDAAIKALRASGA
VG

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=407, Percent_Identity=29.4840294840295, Blast_Score=186, Evalue=5e-47,
Organism=Homo sapiens, GI300863124, Length=433, Percent_Identity=27.7136258660508, Blast_Score=171, Evalue=8e-43,
Organism=Homo sapiens, GI300863126, Length=407, Percent_Identity=27.027027027027, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI13376042, Length=433, Percent_Identity=25.4041570438799, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI42794625, Length=398, Percent_Identity=26.6331658291457, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266456254, Length=398, Percent_Identity=26.6331658291457, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=30.03663003663, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI42822893, Length=141, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=33.1081081081081, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=29.2161520190024, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87082093, Length=384, Percent_Identity=25.5208333333333, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=25.0608272506083, Blast_Score=90, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=22.9411764705882, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648431, Length=386, Percent_Identity=27.979274611399, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24585488, Length=325, Percent_Identity=28, Blast_Score=102, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 44012; Mature: 44012

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDENGIFSGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPISD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCCCCC
HNYAWMLEARNKRSLALDLAKPEGKEVLRKLVAEADVFITNFPPPVRARLGVAYADLAPL
CCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCHHHHHCCHHHHCCCC
NERLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRADEDSTPARSVAGMGDHPCA
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCHHHHCCCCCCHHH
MSLFGAIVTALYKRERTGKGSEVKSNLMANGLWSTSVLAQAKLVGAEFQPRRPRERALNA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VANHYRCRDGRWLILSLLNEEKQWPTLTKCLGREDLTDDPRFATKADRHARSIELIGIFD
HHHHHCCCCCCEEEEEHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCEEEEEEHHH
EIFATRDLAEWRKALDGTGLVFGVVGILDDITTDKQLIENEVLVPFENDTTLTINSPIWI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCEEEECCEEEE
EGSTKTRPRKPPGVGEHSDEVLRSAGYDDAAIKALRASGAVG
ECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDENGIFSGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPISD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCCCCC
HNYAWMLEARNKRSLALDLAKPEGKEVLRKLVAEADVFITNFPPPVRARLGVAYADLAPL
CCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCHHHHHCCHHHHCCCC
NERLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRADEDSTPARSVAGMGDHPCA
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCHHHHCCCCCCHHH
MSLFGAIVTALYKRERTGKGSEVKSNLMANGLWSTSVLAQAKLVGAEFQPRRPRERALNA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VANHYRCRDGRWLILSLLNEEKQWPTLTKCLGREDLTDDPRFATKADRHARSIELIGIFD
HHHHHCCCCCCEEEEEHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCEEEEEEHHH
EIFATRDLAEWRKALDGTGLVFGVVGILDDITTDKQLIENEVLVPFENDTTLTINSPIWI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCEEEECCEEEE
EGSTKTRPRKPPGVGEHSDEVLRSAGYDDAAIKALRASGAVG
ECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA