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The map label for this gene is dppC [H]

Identifier: 192290056

GI number: 192290056

Start: 1777017

End: 1777928

Strand: Reverse

Name: dppC [H]

Synonym: Rpal_1658

Alternate gene names: 192290056

Gene position: 1777928-1777017 (Counterclockwise)

Preceding gene: 192290057

Following gene: 192290055

Centisome position: 30.95

GC content: 65.24

Gene sequence:

>912_bases
ATGACCAGCGTCTCCCCTCCGATCGGCGAAACCTCCGCCAGCCCCAAGCCCGCGCGCCGCTCCGCACTACGGGACGCGAT
CGAACACACCCGCTACGTGCTCGGTGACAACCACGTCACCGCCTTCGCCTTCGGCCTTCTGGTGGTGATCGTGTTCGCGG
CTCTATTCGGGCCGTATATCGTCCCCTACGATCCGCTCGCCAGCGACACCGCCCAAGCGCTCAAAGCCCCGTCGGCAGCG
CATTGGTTCGGCACCGATCAGCTCGGCCGTGACATCTTCAGCCGCGTCGTGGTCGCGACCAGGCTCGACCTGTTCATTGC
CGTCGCCTCGGTGGTGCTGGTGTTCCTGATGGGCGGCCTCGCCGGCATCGCGGCCGGTTACTTCGGTGGTTGGACCGACC
GTATCGTCGGCCGGATCGCCGACACCATCATGGCGTTCCCGCTGTTCGTGCTAGCGATGGGCATCGTCGCGGCGCTCGGC
AACACCGTGCAAAACATCATCATCGCCACCGCGATCGTGAACTTCCCGCTGTATGCCCGCGTCGCCCGCGCCGAGGCCAA
TGTCCGCCGCGAAGCCGGCTTCGTGATGGCGGCGCGGCTGTCCGGCAACAGCGAGATGCGTATCCTGCTGGTACACATCC
TGCCTAACATCATGCCGATAATGATCGTGCAGATGTCGCTGACGATGGGCTACGCCATCCTCAACGCCGCCGGCCTGTCG
TTCATCGGCCTCGGCGTCCGTCCGCCGACCGCCGAATGGGGCATCATGGTCGCAGAAGGTGCCTCGTTCATGGTCTCCGG
CGAATGGTGGATCGCGCTGTTCCCCGGCCTCGCGCTGATGATCGCCGTGTTCTGCTTCAACCTGCTCGGCGACGGCCTGC
GCGACATTTTTGATCCGCAGCGGAGGACGTGA

Upstream 100 bases:

>100_bases
CTCACCATGGCGGTGATGTACGTGCTGCTCAATCTGGCGATCGACATTCTCTACGGCGTGATCGACCCACGCGTGCGGCT
GGAAGGCTAGGAGCATGACC

Downstream 100 bases:

>100_bases
GCCATGAACCTGTCAGCCGCTCACCTCGCCTCACAAGCCTCCGTCATGGCCGGGCTTGACCCGGCCATCCATCCCGCTTC
GCAAAAGCGTCTTTCAAAGA

Product: ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTSVSPPIGETSASPKPARRSALRDAIEHTRYVLGDNHVTAFAFGLLVVIVFAALFGPYIVPYDPLASDTAQALKAPSAA
HWFGTDQLGRDIFSRVVVATRLDLFIAVASVVLVFLMGGLAGIAAGYFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALG
NTVQNIIIATAIVNFPLYARVARAEANVRREAGFVMAARLSGNSEMRILLVHILPNIMPIMIVQMSLTMGYAILNAAGLS
FIGLGVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIFDPQRRT

Sequences:

>Translated_303_residues
MTSVSPPIGETSASPKPARRSALRDAIEHTRYVLGDNHVTAFAFGLLVVIVFAALFGPYIVPYDPLASDTAQALKAPSAA
HWFGTDQLGRDIFSRVVVATRLDLFIAVASVVLVFLMGGLAGIAAGYFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALG
NTVQNIIIATAIVNFPLYARVARAEANVRREAGFVMAARLSGNSEMRILLVHILPNIMPIMIVQMSLTMGYAILNAAGLS
FIGLGVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIFDPQRRT
>Mature_302_residues
TSVSPPIGETSASPKPARRSALRDAIEHTRYVLGDNHVTAFAFGLLVVIVFAALFGPYIVPYDPLASDTAQALKAPSAAH
WFGTDQLGRDIFSRVVVATRLDLFIAVASVVLVFLMGGLAGIAAGYFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALGN
TVQNIIIATAIVNFPLYARVARAEANVRREAGFVMAARLSGNSEMRILLVHILPNIMPIMIVQMSLTMGYAILNAAGLSF
IGLGVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIFDPQRRT

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=293, Percent_Identity=39.5904436860068, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1787054, Length=265, Percent_Identity=42.6415094339623, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=42.3868312757202, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1789964, Length=260, Percent_Identity=41.5384615384615, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787498, Length=261, Percent_Identity=34.0996168582375, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787549, Length=260, Percent_Identity=31.5384615384615, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=25.7777777777778, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32486; Mature: 32355

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVSPPIGETSASPKPARRSALRDAIEHTRYVLGDNHVTAFAFGLLVVIVFAALFGPYI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
VPYDPLASDTAQALKAPSAAHWFGTDQLGRDIFSRVVVATRLDLFIAVASVVLVFLMGGL
CCCCCCCHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIAAGYFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYAR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VARAEANVRREAGFVMAARLSGNSEMRILLVHILPNIMPIMIVQMSLTMGYAILNAAGLS
HHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
FIGLGVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIFDPQ
HEECCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RRT
CCC
>Mature Secondary Structure 
TSVSPPIGETSASPKPARRSALRDAIEHTRYVLGDNHVTAFAFGLLVVIVFAALFGPYI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
VPYDPLASDTAQALKAPSAAHWFGTDQLGRDIFSRVVVATRLDLFIAVASVVLVFLMGGL
CCCCCCCHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIAAGYFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYAR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VARAEANVRREAGFVMAARLSGNSEMRILLVHILPNIMPIMIVQMSLTMGYAILNAAGLS
HHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
FIGLGVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIFDPQ
HEECCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RRT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]