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The map label for this gene is dppB [H]

Identifier: 192290057

GI number: 192290057

Start: 1777939

End: 1778952

Strand: Reverse

Name: dppB [H]

Synonym: Rpal_1659

Alternate gene names: 192290057

Gene position: 1778952-1777939 (Counterclockwise)

Preceding gene: 192290058

Following gene: 192290056

Centisome position: 30.97

GC content: 65.98

Gene sequence:

>1014_bases
ATGCTCACCCTGATCGGCAAACGCCTGATGTTCGCGATCCCGAGCCTGATCGGCGTGGTGATCGTCACCTTCCTGCTGAC
CCGCGCGCTGCCGGGCGATCCGGCTGCTTACTTCGCAGGCCCAGCCGCTAGCAAGGAGGCGATCGAGCAGATCCGCCACA
AGCTGGGGCTCGACAAATCGCTCCCCGAGCAGTTCGTCCGCTACACCACGGAGCTGGCGCAGGGCGATCTCGGCCAGTCG
CTGACGACCGGCCAGCCGGTCGCCACCGAGATCCGCAACCGCCTGCCCGCCTCCGCCGAACTGACGCTGCTCGGGCTCGC
GATCGCCGTCGTCATCGCGATTCCGCTCGGCATCATGGCGGCGACGCGGCCGGGCTCGTGGATCGATCACCTCTGCCGCA
TCACCACTACCGCCGGCGTGTCGCTGCCGGTGTTCTTCACCGGCCTACTGCTGGTCTATGTATTCTACTTCAAGCTCGGC
TGGTCGCCGGCGCCACTGGGCCGGCTCGACGTGTTCTACAGCGCGCCGCCCACCGTCACCGGCTTCTATCTGATCGACAG
CCTGATCGCCCGCGACTTCGAAACTTTCCGCTCGGCCCTCAGCCAGCTCCTCCTTCCCGCGGCAACGCTGGCGATCTTCT
CGCTGGCTCCGATCGCCCGCATGACCCGCGCCTCGATGCTGGCGATCCTGGCGTCAGATTTCGTCCGCACCGCGCGGGCC
AGCGGCCTGTCGCCGCGCAAGGTGACCATGACCTATGCGTTCCGCAACGCCATGCTGCCTGTGATCACCACGCTGTCGAT
GGTGTTCTCGTTCCTACTCGGCGCCAACGTGCTGGTCGAGAAGGTGTTCGCCTGGCCCGGCATCGGCTCCTACGCGGTCG
AAGCGCTGATCGCGTCCGATTTTGCGCCGGTGCAAGGCTTCGTGCTCACCATGGCGGTGATGTACGTGCTGCTCAATCTG
GCGATCGACATTCTCTACGGCGTGATCGACCCACGCGTGCGGCTGGAAGGCTAG

Upstream 100 bases:

>100_bases
TGGGGAGCCCCACCCCCGACCCCTCCCCGCAAGGGGGAGGGGAGCAGGCTCGGCCCCGTAGTTGCTTCAGCAATCACGAC
GTTAACAAGAGTTTGATCCA

Downstream 100 bases:

>100_bases
GAGCATGACCATGACCAGCGTCTCCCCTCCGATCGGCGAAACCTCCGCCAGCCCCAAGCCCGCGCGCCGCTCCGCACTAC
GGGACGCGATCGAACACACC

Product: ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLTLIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRHKLGLDKSLPEQFVRYTTELAQGDLGQS
LTTGQPVATEIRNRLPASAELTLLGLAIAVVIAIPLGIMAATRPGSWIDHLCRITTTAGVSLPVFFTGLLLVYVFYFKLG
WSPAPLGRLDVFYSAPPTVTGFYLIDSLIARDFETFRSALSQLLLPAATLAIFSLAPIARMTRASMLAILASDFVRTARA
SGLSPRKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMAVMYVLLNL
AIDILYGVIDPRVRLEG

Sequences:

>Translated_337_residues
MLTLIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRHKLGLDKSLPEQFVRYTTELAQGDLGQS
LTTGQPVATEIRNRLPASAELTLLGLAIAVVIAIPLGIMAATRPGSWIDHLCRITTTAGVSLPVFFTGLLLVYVFYFKLG
WSPAPLGRLDVFYSAPPTVTGFYLIDSLIARDFETFRSALSQLLLPAATLAIFSLAPIARMTRASMLAILASDFVRTARA
SGLSPRKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMAVMYVLLNL
AIDILYGVIDPRVRLEG
>Mature_337_residues
MLTLIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRHKLGLDKSLPEQFVRYTTELAQGDLGQS
LTTGQPVATEIRNRLPASAELTLLGLAIAVVIAIPLGIMAATRPGSWIDHLCRITTTAGVSLPVFFTGLLLVYVFYFKLG
WSPAPLGRLDVFYSAPPTVTGFYLIDSLIARDFETFRSALSQLLLPAATLAIFSLAPIARMTRASMLAILASDFVRTARA
SGLSPRKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMAVMYVLLNL
AIDILYGVIDPRVRLEG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=45.8860759493671, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=39.3491124260355, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=36.6071428571429, Blast_Score=227, Evalue=7e-61,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=32.3442136498516, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787550, Length=281, Percent_Identity=32.0284697508897, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787497, Length=336, Percent_Identity=29.1666666666667, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788504, Length=375, Percent_Identity=26.4, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36361; Mature: 36361

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRHKLGLDKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCC
LPEQFVRYTTELAQGDLGQSLTTGQPVATEIRNRLPASAELTLLGLAIAVVIAIPLGIMA
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ATRPGSWIDHLCRITTTAGVSLPVFFTGLLLVYVFYFKLGWSPAPLGRLDVFYSAPPTVT
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHH
GFYLIDSLIARDFETFRSALSQLLLPAATLAIFSLAPIARMTRASMLAILASDFVRTARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLSPRKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
FAPVQGFVLTMAVMYVLLNLAIDILYGVIDPRVRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MLTLIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRHKLGLDKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCC
LPEQFVRYTTELAQGDLGQSLTTGQPVATEIRNRLPASAELTLLGLAIAVVIAIPLGIMA
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ATRPGSWIDHLCRITTTAGVSLPVFFTGLLLVYVFYFKLGWSPAPLGRLDVFYSAPPTVT
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHH
GFYLIDSLIARDFETFRSALSQLLLPAATLAIFSLAPIARMTRASMLAILASDFVRTARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLSPRKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
FAPVQGFVLTMAVMYVLLNLAIDILYGVIDPRVRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]