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The map label for this gene is yliD [C]

Identifier: 192289818

GI number: 192289818

Start: 1485808

End: 1486698

Strand: Reverse

Name: yliD [C]

Synonym: Rpal_1408

Alternate gene names: 192289818

Gene position: 1486698-1485808 (Counterclockwise)

Preceding gene: 192289819

Following gene: 192289817

Centisome position: 25.88

GC content: 66.33

Gene sequence:

>891_bases
ATGGCGATCGATACCATGTCCGAACCGACCCTTCCTGTGCCGCGCCCGATGCGTCCGCGGCTCGGTTTCCTGCTGTCGAC
GCCGATCATCGCCGTCGCCACCATCTGCCTGACGCTGGTCGTACTGATGGCGATCTTCGCGCCGTGGCTGGCGCCGCACG
ATCCGGTGAAGCTGGCGCCGGCGCTGCGGCTGAAGCCGCCGAGTGCCGAATTCCTGCTCGGCACCGACGCCTACGGCCGC
GATCTGCTGTCGCGCATCATCTATGGCGGCCGGGTGTCGCTATTGATCGGTATCGGCTCGGCGATCGTCGCCATCGCGAT
CGGCCTCGTCATCGGTCTGGTCGCCGGCTTCTTCCGCTGGGTCGACGCGGTGATGATGCGGGTGATGGACGGCTTGATGG
CGATTCCCAGCGTCCTGCTGGCGATCGCCGTAGTGTCGCTGTCCGGCGCCAGCCTGACCACGGTGCTGATCGCGATCACC
ATTCCGGAAATCCCGCGGGTCGCCCGGCTGGTCCGCTCGGTAGTGCTGACCGCGCGCGAAGAGCCCTATGTCGAAGCCGC
GATCTCAGTCGGCTCCAGCCTGCCGAAGATCATGGTGCGGCACCTGATGCCCAACACGGTAGCGCCGCTGATCGTGCAGG
GCACCTACATCGCCGCCTCGGCAATCCTCACCGAAGCGATCCTGTCGTTCCTCGGCGCTGGCATCAGCCCGGAGACGCCG
ACCTGGGGCAACATCATGGCCGAAGGCCGCGCCTACTTTCAGATCAAGCCGATGCTGATCTTCTGGCCGGGCCTCTTGCT
GTCGATCGCGATCCTGTCGGTCAACCTGATCGGTGACGCCGCCCGCGACGCGCTCGACCCGCGGATGAAACAGCGCGAGG
GCAGCCGATGA

Upstream 100 bases:

>100_bases
ATCCTGCTGACCAGCGGCATCTACGTCGCCGTCAATCTGTTGATCGATCTGGCCTACACGCTGCTCGATCCCCGTATCCG
GTACTGAGGGCGCGCGCACC

Downstream 100 bases:

>100_bases
AGAGGCAGCTCATCATGTCTGCTCTCTCAGCCCCACAACGCGCACCGACCTCACCTCTCCCCGCGCGCGGGGAGAGGGAG
CGCGCCCTGCCCGACTGCGG

Product: ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MAIDTMSEPTLPVPRPMRPRLGFLLSTPIIAVATICLTLVVLMAIFAPWLAPHDPVKLAPALRLKPPSAEFLLGTDAYGR
DLLSRIIYGGRVSLLIGIGSAIVAIAIGLVIGLVAGFFRWVDAVMMRVMDGLMAIPSVLLAIAVVSLSGASLTTVLIAIT
IPEIPRVARLVRSVVLTAREEPYVEAAISVGSSLPKIMVRHLMPNTVAPLIVQGTYIAASAILTEAILSFLGAGISPETP
TWGNIMAEGRAYFQIKPMLIFWPGLLLSIAILSVNLIGDAARDALDPRMKQREGSR

Sequences:

>Translated_296_residues
MAIDTMSEPTLPVPRPMRPRLGFLLSTPIIAVATICLTLVVLMAIFAPWLAPHDPVKLAPALRLKPPSAEFLLGTDAYGR
DLLSRIIYGGRVSLLIGIGSAIVAIAIGLVIGLVAGFFRWVDAVMMRVMDGLMAIPSVLLAIAVVSLSGASLTTVLIAIT
IPEIPRVARLVRSVVLTAREEPYVEAAISVGSSLPKIMVRHLMPNTVAPLIVQGTYIAASAILTEAILSFLGAGISPETP
TWGNIMAEGRAYFQIKPMLIFWPGLLLSIAILSVNLIGDAARDALDPRMKQREGSR
>Mature_295_residues
AIDTMSEPTLPVPRPMRPRLGFLLSTPIIAVATICLTLVVLMAIFAPWLAPHDPVKLAPALRLKPPSAEFLLGTDAYGRD
LLSRIIYGGRVSLLIGIGSAIVAIAIGLVIGLVAGFFRWVDAVMMRVMDGLMAIPSVLLAIAVVSLSGASLTTVLIAITI
PEIPRVARLVRSVVLTAREEPYVEAAISVGSSLPKIMVRHLMPNTVAPLIVQGTYIAASAILTEAILSFLGAGISPETPT
WGNIMAEGRAYFQIKPMLIFWPGLLLSIAILSVNLIGDAARDALDPRMKQREGSR

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=260, Percent_Identity=39.6153846153846, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1787760, Length=295, Percent_Identity=35.9322033898305, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1789964, Length=258, Percent_Identity=39.5348837209302, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1789889, Length=251, Percent_Identity=36.2549800796813, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1787498, Length=262, Percent_Identity=34.7328244274809, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1787549, Length=257, Percent_Identity=35.7976653696498, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788505, Length=229, Percent_Identity=31.8777292576419, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31572; Mature: 31441

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDTMSEPTLPVPRPMRPRLGFLLSTPIIAVATICLTLVVLMAIFAPWLAPHDPVKLAP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ALRLKPPSAEFLLGTDAYGRDLLSRIIYGGRVSLLIGIGSAIVAIAIGLVIGLVAGFFRW
CCEECCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAVMMRVMDGLMAIPSVLLAIAVVSLSGASLTTVLIAITIPEIPRVARLVRSVVLTARE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
EPYVEAAISVGSSLPKIMVRHLMPNTVAPLIVQGTYIAASAILTEAILSFLGAGISPETP
CHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
TWGNIMAEGRAYFQIKPMLIFWPGLLLSIAILSVNLIGDAARDALDPRMKQREGSR
CCCHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
>Mature Secondary Structure 
AIDTMSEPTLPVPRPMRPRLGFLLSTPIIAVATICLTLVVLMAIFAPWLAPHDPVKLAP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ALRLKPPSAEFLLGTDAYGRDLLSRIIYGGRVSLLIGIGSAIVAIAIGLVIGLVAGFFRW
CCEECCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAVMMRVMDGLMAIPSVLLAIAVVSLSGASLTTVLIAITIPEIPRVARLVRSVVLTARE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
EPYVEAAISVGSSLPKIMVRHLMPNTVAPLIVQGTYIAASAILTEAILSFLGAGISPETP
CHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
TWGNIMAEGRAYFQIKPMLIFWPGLLLSIAILSVNLIGDAARDALDPRMKQREGSR
CCCHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]