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The map label for this gene is yliC [C]

Identifier: 192289819

GI number: 192289819

Start: 1486712

End: 1487653

Strand: Reverse

Name: yliC [C]

Synonym: Rpal_1409

Alternate gene names: 192289819

Gene position: 1487653-1486712 (Counterclockwise)

Preceding gene: 192289820

Following gene: 192289818

Centisome position: 25.9

GC content: 65.18

Gene sequence:

>942_bases
ATGCTCGGCTATCTGATCCGTCGTTTGCTGGCGGCCATCCCGGTGATGGGTGTGGTCGCACTGTTCGTGTTCCTGCTGCT
GCGCCTGACACCGGGCGATCCCGCCGCGATCATTGCCGGCGACAGCGCCACCCCTGAACAATTGATGCGCATCCGTACGT
CGCTCGGGCTCAACGAGCCGCTCTACGTGCAGTTCTTCACCTGGATCGGACGGCTGCTGCACGGCGACCTCGGCGTCTCG
CTGATCTCGCAGGTGCCGGTGCTGCAGATGATCAGCCAGCGTATCGAGCCGACCATCACGGTGGCGCTGTCGACCATCGT
GCTGTCGGTCATCGTCGCGATTCCGCTCGGCGTCGTCGCCGCGTGGAAACACGGCACCTGGGTCGACCGCTTCGTGATGG
GCCTGTCCGTGATCGGCTTCTCGGTGCCGGTGTTCGTGATCGGCTACGTGCTGATCCAGATCTTCGCGATCGAGCTGCGC
TGGCTGCCGGTGCAGGGCTTCCGCCCGATGGCGCGCGGCTTCGGTCCATTTGCCGAGCGGCTGGTGCTGCCGACGCTGAC
GCTGTCCTTCATCTACATCGCGCTGATCGCACGAATGACGCGGGCGGCGATGCTCGACGTGCTGGGCGAGGACTATGTCC
GCACGGCGCGCGCCAAGGGCATCAACGAAAGCCGCGTGCTGCTGCGCCACGCGCTGCGCAATGCGGCGGTCCCGGTAATC
ACCGTGATCGGCACAGGCTTTGCGCTGTTGATCTCCGGCGTCGTCGTCACCGAGAGCGTGTTCAACCTGCCCGGCATCGG
CCGCCTCACCGTCGACGCGGTGCTGGCGCGCGACTACCCGGTGATTCAGGGCATGATCCTGCTGACCAGCGGCATCTACG
TCGCCGTCAATCTGTTGATCGATCTGGCCTACACGCTGCTCGATCCCCGTATCCGGTACTGA

Upstream 100 bases:

>100_bases
GAGGGTGATTTCGACGGCATCAAGCGCAGGTGATGATGACGAACCGCATCTTCGGGATAAGTTTCGCTAATCGTCGATCC
AAATCCATGATGGAGCGCCG

Downstream 100 bases:

>100_bases
GGGCGCGCGCACCATGGCGATCGATACCATGTCCGAACCGACCCTTCCTGTGCCGCGCCCGATGCGTCCGCGGCTCGGTT
TCCTGCTGTCGACGCCGATC

Product: ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLGYLIRRLLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDSATPEQLMRIRTSLGLNEPLYVQFFTWIGRLLHGDLGVS
LISQVPVLQMISQRIEPTITVALSTIVLSVIVAIPLGVVAAWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELR
WLPVQGFRPMARGFGPFAERLVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGINESRVLLRHALRNAAVPVI
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLIDLAYTLLDPRIRY

Sequences:

>Translated_313_residues
MLGYLIRRLLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDSATPEQLMRIRTSLGLNEPLYVQFFTWIGRLLHGDLGVS
LISQVPVLQMISQRIEPTITVALSTIVLSVIVAIPLGVVAAWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELR
WLPVQGFRPMARGFGPFAERLVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGINESRVLLRHALRNAAVPVI
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLIDLAYTLLDPRIRY
>Mature_313_residues
MLGYLIRRLLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDSATPEQLMRIRTSLGLNEPLYVQFFTWIGRLLHGDLGVS
LISQVPVLQMISQRIEPTITVALSTIVLSVIVAIPLGVVAAWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELR
WLPVQGFRPMARGFGPFAERLVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGINESRVLLRHALRNAAVPVI
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLIDLAYTLLDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=44.7284345047923, Blast_Score=277, Evalue=5e-76,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=39.0532544378698, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=39.6825396825397, Blast_Score=228, Evalue=3e-61,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=37.1428571428571, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=37.5, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=28.5318559556787, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.4725274725275, Blast_Score=130, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34213; Mature: 34213

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGYLIRRLLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDSATPEQLMRIRTSLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCC
LYVQFFTWIGRLLHGDLGVSLISQVPVLQMISQRIEPTITVALSTIVLSVIVAIPLGVVA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELRWLPVQGFRPMARGFGPFAER
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCHHHHH
LVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGINESRVLLRHALRNAAVPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLI
HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLAYTLLDPRIRY
HHHHHHHCCCCCC
>Mature Secondary Structure
MLGYLIRRLLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDSATPEQLMRIRTSLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCC
LYVQFFTWIGRLLHGDLGVSLISQVPVLQMISQRIEPTITVALSTIVLSVIVAIPLGVVA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELRWLPVQGFRPMARGFGPFAER
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCHHHHH
LVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGINESRVLLRHALRNAAVPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLI
HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLAYTLLDPRIRY
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]