| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289814
Identifier: 192289814
GI number: 192289814
Start: 1479965
End: 1481017
Strand: Reverse
Name: 192289814
Synonym: Rpal_1404
Alternate gene names: NA
Gene position: 1481017-1479965 (Counterclockwise)
Preceding gene: 192289815
Following gene: 192289813
Centisome position: 25.78
GC content: 66.38
Gene sequence:
>1053_bases ATGAACTACGCTCAGCTTTGGACCGGTTCGGCAGGAATCGACACCACCAAGCCGACCCACCCGTTCACCCATCATGAAAT CCTCGGGCTGGTGCAGCCGTTCACGCAACGCGGCTACCAAGTGAACCTCGCCGCCAGCGATCGCATCGCCCGCCGGCTGA TCTTCAAACCGGTGACGCACGAGAAATCCGATCGCAGCGGAATCGATGCGACCGAGGTGCTGCAGCTCGACAATCCGCGC CCGGGTCTGCACCTCATAACCCGAACACTGACGTTGCCGCAGGGGCTGTCGGCGACGCTCGAAAGCCAGGGAGACGATCC GGCGGCGTTGTTGCAGCGGATCGAAACGGTGCTGCCGCAGCAACAGTTCCGCACCGTCGAAGGCACCGCGGTGGCGCTGA GCTATCGCCTGGTGCAGCCGAACGCGCGTCGCGCTGCGACCGACACGGTGCGCCGCGAGCTGATCCGGGGCGAGGCCGAG ATCGCCGGCTTCACGGTGGTGCTGCGTGCAGCCCAGGTTCGCAGCTATCCGGCCGAGATCGACATCACTCCGAAGGCCCC CGGCGTGGCGCTGCCGGAGGATCTGCTCGCCGTCATCGGCTGGTCGTGGTCCACGCTGCGCAAGAACAAATCCGGCTTCA CCGGCAAGCTGATGGTGCGCGGCCAGGAACCCGAGCGAAGCGGCCGCGTCGAAGCCGCCTTTGAGAAGACCGTGGCGCAT CTGGAACGCACCCTCACGCGGCCTCCGGCCGCGTATTACGAAAAGCTGCGCGGTGCGCGCTGGACCGTCACCTTCCGCCG CGCCGTGCCAGCGTTGTTCTTCGGCGGCCTGATCGCCGGAGCCGCCAGCCTGACGATGATCGACGTGCCGCAGGACTCGA TCTTCAACCTGCTGCTGATGGGCGCACCGCCGCTGCTGATGTTCGGCGCGTTCGGCATGCGCGAAACCCCTTCGCTGGAG ATTCCCCCGATTCCCCGGTGCTGGAAGGAGACCTGGCTGCCGGAGTCCGAGCCGGAACCGACCACGACCAACCTGGATGC CCAGACGACCTGA
Upstream 100 bases:
>100_bases GAAACTAGACCCAACGCGATCGACTGAGCGCGTGAATCGCGGCGCGGCTCCTCATCGGGCTGCGCCGCAGCTGCTCACAC TGCGGAGGTTGGTGACGGTC
Downstream 100 bases:
>100_bases CGAGCGAGGACACGATCGATGCACGGCAACCCGATGAACATCCCTCCGGTCTCGATCGCAGCCGCCAAGGCCGCGCTGAT CGAGCAATACGCCGATCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MNYAQLWTGSAGIDTTKPTHPFTHHEILGLVQPFTQRGYQVNLAASDRIARRLIFKPVTHEKSDRSGIDATEVLQLDNPR PGLHLITRTLTLPQGLSATLESQGDDPAALLQRIETVLPQQQFRTVEGTAVALSYRLVQPNARRAATDTVRRELIRGEAE IAGFTVVLRAAQVRSYPAEIDITPKAPGVALPEDLLAVIGWSWSTLRKNKSGFTGKLMVRGQEPERSGRVEAAFEKTVAH LERTLTRPPAAYYEKLRGARWTVTFRRAVPALFFGGLIAGAASLTMIDVPQDSIFNLLLMGAPPLLMFGAFGMRETPSLE IPPIPRCWKETWLPESEPEPTTTNLDAQTT
Sequences:
>Translated_350_residues MNYAQLWTGSAGIDTTKPTHPFTHHEILGLVQPFTQRGYQVNLAASDRIARRLIFKPVTHEKSDRSGIDATEVLQLDNPR PGLHLITRTLTLPQGLSATLESQGDDPAALLQRIETVLPQQQFRTVEGTAVALSYRLVQPNARRAATDTVRRELIRGEAE IAGFTVVLRAAQVRSYPAEIDITPKAPGVALPEDLLAVIGWSWSTLRKNKSGFTGKLMVRGQEPERSGRVEAAFEKTVAH LERTLTRPPAAYYEKLRGARWTVTFRRAVPALFFGGLIAGAASLTMIDVPQDSIFNLLLMGAPPLLMFGAFGMRETPSLE IPPIPRCWKETWLPESEPEPTTTNLDAQTT >Mature_350_residues MNYAQLWTGSAGIDTTKPTHPFTHHEILGLVQPFTQRGYQVNLAASDRIARRLIFKPVTHEKSDRSGIDATEVLQLDNPR PGLHLITRTLTLPQGLSATLESQGDDPAALLQRIETVLPQQQFRTVEGTAVALSYRLVQPNARRAATDTVRRELIRGEAE IAGFTVVLRAAQVRSYPAEIDITPKAPGVALPEDLLAVIGWSWSTLRKNKSGFTGKLMVRGQEPERSGRVEAAFEKTVAH LERTLTRPPAAYYEKLRGARWTVTFRRAVPALFFGGLIAGAASLTMIDVPQDSIFNLLLMGAPPLLMFGAFGMRETPSLE IPPIPRCWKETWLPESEPEPTTTNLDAQTT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38665; Mature: 38665
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYAQLWTGSAGIDTTKPTHPFTHHEILGLVQPFTQRGYQVNLAASDRIARRLIFKPVTH CCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCC EKSDRSGIDATEVLQLDNPRPGLHLITRTLTLPQGLSATLESQGDDPAALLQRIETVLPQ CCCCCCCCCHHHEEECCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHCCH QQFRTVEGTAVALSYRLVQPNARRAATDTVRRELIRGEAEIAGFTVVLRAAQVRSYPAEI HHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCE DITPKAPGVALPEDLLAVIGWSWSTLRKNKSGFTGKLMVRGQEPERSGRVEAAFEKTVAH EECCCCCCCCCCHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH LERTLTRPPAAYYEKLRGARWTVTFRRAVPALFFGGLIAGAASLTMIDVPQDSIFNLLLM HHHHHCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHH GAPPLLMFGAFGMRETPSLEIPPIPRCWKETWLPESEPEPTTTNLDAQTT CCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNYAQLWTGSAGIDTTKPTHPFTHHEILGLVQPFTQRGYQVNLAASDRIARRLIFKPVTH CCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCC EKSDRSGIDATEVLQLDNPRPGLHLITRTLTLPQGLSATLESQGDDPAALLQRIETVLPQ CCCCCCCCCHHHEEECCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHCCH QQFRTVEGTAVALSYRLVQPNARRAATDTVRRELIRGEAEIAGFTVVLRAAQVRSYPAEI HHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCE DITPKAPGVALPEDLLAVIGWSWSTLRKNKSGFTGKLMVRGQEPERSGRVEAAFEKTVAH EECCCCCCCCCCHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH LERTLTRPPAAYYEKLRGARWTVTFRRAVPALFFGGLIAGAASLTMIDVPQDSIFNLLLM HHHHHCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHH GAPPLLMFGAFGMRETPSLEIPPIPRCWKETWLPESEPEPTTTNLDAQTT CCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA