Click here to switch to the map view.

The map label for this gene is rsmE [H]

Identifier: 192289752

GI number: 192289752

Start: 1414611

End: 1415366

Strand: Reverse

Name: rsmE [H]

Synonym: Rpal_1342

Alternate gene names: 192289752

Gene position: 1415366-1414611 (Counterclockwise)

Preceding gene: 192289755

Following gene: 192289751

Centisome position: 24.64

GC content: 69.58

Gene sequence:

>756_bases
ATGAGCCGATACGACTTCCGCAGCCCCCGCCTTTTCGTCGATGCCGCCCTCGCGCCCGGTGCGCAGGTGCCGCTCGAGCG
CGACCAGAGCAATTATCTCGGCAATGTGCTGCGGCTCGGTGCCGGCGCCGCCGTGCTGGCCTTCAATGGTCGTGACGGCG
AGTGGCGCGCCACCATCGCGGGCCGCAAGCGGCCCGAGGCGCTGGAGGTGGCGGAGCAGACGCGGCCGCAGGACCGCCTC
CCCGACGTCGCCTATGTGTTCGCCCCGCTGAAGCACGCCAGGCTCGACTATATGGCTCAAAAGGCTGTGGAAATGGGCGC
CGGCCGGCTGCAGCCGGTGCTCACCCAGCACACCCAGGTGCACCGGCTGAACACCGACCGGATGCGCGCCAATGTGATCG
AGGCCGCCGAGCAATGCGGCATCCTCAGCCTCGCCGAGGTTGGCGAGCCGATCGGGCTGGACCGGTTCCTGGCCAGCCGG
GCAAACGGAGAGCGGCTGCTGGTGTTCTGCGACGAGGACGCGGAGATCGCCGATCCGGTCGCCGCGCTCCAGGCCGCCCG
GGATGCGGCGGCCAGGGGCGTCGACCTGCTGGTCGGGCCCGAGGGCGGGTTTTCCACCGAAGAGCGCGCTTTGCTGCTGA
AACAGCCCGTCATCCTGCGGCTAGCACTGGGCCCGCGGATTATGCGGGCCGACACTGCAGCGGTCGCCGCCCTGACTCTG
GTTCAGGCGGTGTTGGGCGACTGGAAGGGTAATTAG

Upstream 100 bases:

>100_bases
TTAACAACCCGGCGATTGGGGCGGCAGCGCGGCGCTTCGCCCCACAGGCGGCTGATATTCTTGAAAAATTGGGTTAGAAG
CGGCGCGTGAGAACCAGCCG

Downstream 100 bases:

>100_bases
GTAACATTCGACCATTGGCGCCGCCCCGCCCCTTCGAACCGCGGCGGATGACGGTCGAATCTGTCATCCACCCGTGTTAA
GGGCTGCGCCGACTAGCGTT

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSRYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPEALEVAEQTRPQDRL
PDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLASR
ANGERLLVFCDEDAEIADPVAALQAARDAAARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTL
VQAVLGDWKGN

Sequences:

>Translated_251_residues
MSRYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPEALEVAEQTRPQDRL
PDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLASR
ANGERLLVFCDEDAEIADPVAALQAARDAAARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTL
VQAVLGDWKGN
>Mature_250_residues
SRYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPEALEVAEQTRPQDRLP
DVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLASRA
NGERLLVFCDEDAEIADPVAALQAARDAAARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTLV
QAVLGDWKGN

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=251, Percent_Identity=25.8964143426295, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 27181; Mature: 27050

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIA
CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEEC
GRKRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQV
CCCCCHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
HRLNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLASRANGERLLVFCDEDAEIADPV
HHCCHHHHHHHHHHHHHHCCEEEHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHH
AALQAARDAAARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTL
HHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
VQAVLGDWKGN
HHHHHHCCCCC
>Mature Secondary Structure 
SRYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIA
CCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEEC
GRKRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQV
CCCCCHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
HRLNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLASRANGERLLVFCDEDAEIADPV
HHCCHHHHHHHHHHHHHHCCEEEHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHH
AALQAARDAAARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTL
HHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
VQAVLGDWKGN
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8332061 [H]